Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt abgT and ogt are separated by 10 nucleotides ogt and fnr are separated by 194 nucleotides fnr and uspE are separated by 151 nucleotides
JDDGAC_04775: abgT - p-aminobenzoyl-glutamate transporter, at 827,989 to 829,515
abgT
JDDGAC_04780: ogt - methylated-DNA--[protein]-cysteine S-methyltransferase, at 829,526 to 830,041
ogt
JDDGAC_04785: fnr - fumarate/nitrate reduction transcriptional regulator Fnr, at 830,236 to 830,988
fnr
JDDGAC_04790: uspE - universal stress protein UspE, at 831,140 to 832,090
uspE
Position (kb) 830
831 Strain fitness (log2 ratio) -1
0
1
2 at 829.329 kb on - strand, within abgT at 829.397 kb on - strand at 829.397 kb on - strand at 829.466 kb on - strand at 829.495 kb on - strand at 829.498 kb on + strand at 829.710 kb on + strand, within ogt at 829.753 kb on + strand, within ogt at 829.936 kb on - strand, within ogt at 830.132 kb on - strand at 830.137 kb on + strand at 830.177 kb on - strand at 830.235 kb on + strand at 830.256 kb on + strand at 830.256 kb on + strand at 830.257 kb on - strand at 830.364 kb on + strand, within fnr at 830.472 kb on + strand, within fnr at 830.597 kb on + strand, within fnr at 830.923 kb on + strand at 830.923 kb on + strand at 831.000 kb on - strand at 831.020 kb on + strand at 831.126 kb on + strand at 831.126 kb on + strand at 831.127 kb on - strand at 831.219 kb on + strand at 831.263 kb on + strand, within uspE at 831.275 kb on + strand, within uspE at 831.275 kb on + strand, within uspE at 831.748 kb on + strand, within uspE at 831.921 kb on + strand, within uspE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 829,329 - abgT JDDGAC_04775 0.88 -0.3 829,397 - +0.1 829,397 - +0.1 829,466 - +0.8 829,495 - -0.1 829,498 + -0.5 829,710 + ogt JDDGAC_04780 0.36 -0.9 829,753 + ogt JDDGAC_04780 0.44 -0.7 829,936 - ogt JDDGAC_04780 0.79 -0.6 830,132 - +0.3 830,137 + -0.5 830,177 - +1.8 830,235 + +0.7 830,256 + +0.5 830,256 + -0.3 830,257 - -1.6 830,364 + fnr JDDGAC_04785 0.17 -1.0 830,472 + fnr JDDGAC_04785 0.31 -0.7 830,597 + fnr JDDGAC_04785 0.48 -0.9 830,923 + +0.3 830,923 + +0.1 831,000 - +1.1 831,020 + -0.5 831,126 + -0.6 831,126 + +1.7 831,127 - -0.1 831,219 + -0.5 831,263 + uspE JDDGAC_04790 0.13 -0.0 831,275 + uspE JDDGAC_04790 0.14 +0.2 831,275 + uspE JDDGAC_04790 0.14 -0.1 831,748 + uspE JDDGAC_04790 0.64 +0.2 831,921 + uspE JDDGAC_04790 0.82 +0.4
Or see this region's nucleotide sequence