Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04235

Experiment: WM_K30

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntynbD and ynbC overlap by 11 nucleotidesynbC and ynbB are separated by 15 nucleotidesynbB and ynbA overlap by 1 nucleotides JDDGAC_04230: ynbD - Uncharacterized protein YnbD, at 741,196 to 742,512 ynbD JDDGAC_04235: ynbC - Uncharacterized protein YnbC, at 742,502 to 744,259 ynbC JDDGAC_04240: ynbB - Uncharacterized protein YnbB, at 744,275 to 745,171 ynbB JDDGAC_04245: ynbA - Inner membrane protein YnbA, at 745,171 to 745,776 ynbA Position (kb) 742 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 741.547 kb on - strand, within ynbDat 741.570 kb on - strand, within ynbDat 741.624 kb on + strand, within ynbDat 741.628 kb on + strand, within ynbDat 741.770 kb on - strand, within ynbDat 741.787 kb on + strand, within ynbDat 741.788 kb on - strand, within ynbDat 741.846 kb on - strand, within ynbDat 741.846 kb on - strand, within ynbDat 741.931 kb on - strand, within ynbDat 741.961 kb on - strand, within ynbDat 742.069 kb on + strand, within ynbDat 742.110 kb on - strand, within ynbDat 742.301 kb on - strand, within ynbDat 742.329 kb on + strand, within ynbDat 742.396 kb on - strandat 742.433 kb on + strandat 742.648 kb on + strandat 742.999 kb on - strand, within ynbCat 743.039 kb on + strand, within ynbCat 743.288 kb on - strand, within ynbCat 743.525 kb on + strand, within ynbCat 743.569 kb on - strand, within ynbCat 743.751 kb on + strand, within ynbCat 744.020 kb on - strand, within ynbCat 744.107 kb on - strandat 744.208 kb on + strandat 744.209 kb on - strandat 744.420 kb on - strand, within ynbBat 744.420 kb on - strand, within ynbBat 744.845 kb on - strand, within ynbBat 745.058 kb on - strand, within ynbBat 745.067 kb on - strand, within ynbB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
remove
741,547 - ynbD JDDGAC_04230 0.27 -1.3
741,570 - ynbD JDDGAC_04230 0.28 +0.5
741,624 + ynbD JDDGAC_04230 0.32 +0.8
741,628 + ynbD JDDGAC_04230 0.33 +0.4
741,770 - ynbD JDDGAC_04230 0.44 +0.6
741,787 + ynbD JDDGAC_04230 0.45 -0.3
741,788 - ynbD JDDGAC_04230 0.45 +0.5
741,846 - ynbD JDDGAC_04230 0.49 -0.2
741,846 - ynbD JDDGAC_04230 0.49 -0.3
741,931 - ynbD JDDGAC_04230 0.56 +0.5
741,961 - ynbD JDDGAC_04230 0.58 +1.0
742,069 + ynbD JDDGAC_04230 0.66 -1.1
742,110 - ynbD JDDGAC_04230 0.69 +1.3
742,301 - ynbD JDDGAC_04230 0.84 +0.9
742,329 + ynbD JDDGAC_04230 0.86 +1.0
742,396 - -0.3
742,433 + -1.2
742,648 + +0.4
742,999 - ynbC JDDGAC_04235 0.28 -0.7
743,039 + ynbC JDDGAC_04235 0.31 -0.3
743,288 - ynbC JDDGAC_04235 0.45 -1.2
743,525 + ynbC JDDGAC_04235 0.58 -1.3
743,569 - ynbC JDDGAC_04235 0.61 -2.0
743,751 + ynbC JDDGAC_04235 0.71 -1.1
744,020 - ynbC JDDGAC_04235 0.86 +0.1
744,107 - +0.1
744,208 + -0.9
744,209 - +1.0
744,420 - ynbB JDDGAC_04240 0.16 +0.6
744,420 - ynbB JDDGAC_04240 0.16 +0.4
744,845 - ynbB JDDGAC_04240 0.64 -0.2
745,058 - ynbB JDDGAC_04240 0.87 +2.1
745,067 - ynbB JDDGAC_04240 0.88 -3.2

Or see this region's nucleotide sequence