Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03805

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdosP and ddpX are separated by 257 nucleotidesddpX and ddpA are separated by 13 nucleotides JDDGAC_03800: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 653,469 to 654,620 dosP JDDGAC_03805: ddpX - D-alanyl-D-alanine dipeptidase, at 654,878 to 655,459 ddpX JDDGAC_03810: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 655,473 to 657,023 ddpA Position (kb) 654 655 656Strain fitness (log2 ratio) -3 -2 -1 0 1at 654.546 kb on + strandat 654.788 kb on + strandat 654.864 kb on + strandat 654.864 kb on + strandat 654.971 kb on - strand, within ddpXat 654.977 kb on - strand, within ddpXat 655.062 kb on + strand, within ddpXat 655.062 kb on + strand, within ddpXat 655.062 kb on + strand, within ddpXat 655.139 kb on + strand, within ddpXat 655.429 kb on + strandat 655.431 kb on + strandat 655.562 kb on + strandat 655.563 kb on - strandat 655.618 kb on + strandat 655.619 kb on - strandat 655.619 kb on - strandat 655.654 kb on - strand, within ddpAat 655.725 kb on - strand, within ddpAat 655.775 kb on + strand, within ddpAat 655.776 kb on - strand, within ddpAat 655.782 kb on - strand, within ddpAat 655.819 kb on + strand, within ddpAat 655.923 kb on - strand, within ddpAat 656.133 kb on - strand, within ddpAat 656.287 kb on - strand, within ddpAat 656.307 kb on + strand, within ddpAat 656.307 kb on + strand, within ddpAat 656.308 kb on - strand, within ddpAat 656.308 kb on - strand, within ddpAat 656.339 kb on + strand, within ddpA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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654,546 + -0.4
654,788 + +0.2
654,864 + +0.1
654,864 + +0.1
654,971 - ddpX JDDGAC_03805 0.16 -0.8
654,977 - ddpX JDDGAC_03805 0.17 -0.1
655,062 + ddpX JDDGAC_03805 0.32 -2.9
655,062 + ddpX JDDGAC_03805 0.32 -2.5
655,062 + ddpX JDDGAC_03805 0.32 -1.9
655,139 + ddpX JDDGAC_03805 0.45 -2.7
655,429 + +1.3
655,431 + +0.3
655,562 + +0.6
655,563 - +0.3
655,618 + +0.4
655,619 - +0.2
655,619 - +0.6
655,654 - ddpA JDDGAC_03810 0.12 -0.6
655,725 - ddpA JDDGAC_03810 0.16 +0.6
655,775 + ddpA JDDGAC_03810 0.19 +1.5
655,776 - ddpA JDDGAC_03810 0.20 +0.8
655,782 - ddpA JDDGAC_03810 0.20 -0.2
655,819 + ddpA JDDGAC_03810 0.22 -0.7
655,923 - ddpA JDDGAC_03810 0.29 -0.4
656,133 - ddpA JDDGAC_03810 0.43 +0.6
656,287 - ddpA JDDGAC_03810 0.52 +1.4
656,307 + ddpA JDDGAC_03810 0.54 +0.2
656,307 + ddpA JDDGAC_03810 0.54 -0.1
656,308 - ddpA JDDGAC_03810 0.54 +0.4
656,308 - ddpA JDDGAC_03810 0.54 +0.2
656,339 + ddpA JDDGAC_03810 0.56 +0.8

Or see this region's nucleotide sequence