Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03620

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneJ and sad are separated by 100 nucleotidessad and glsB are separated by 63 nucleotidesglsB and yneG overlap by 1 nucleotides JDDGAC_03615: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 600,429 to 601,310 yneJ JDDGAC_03620: sad - succinate-semialdehyde dehydrogenase, at 601,411 to 602,799 sad JDDGAC_03625: glsB - glutaminase B, at 602,863 to 603,789 glsB JDDGAC_03630: yneG - Uncharacterized protein YneG, at 603,789 to 604,148 yneG Position (kb) 601 602 603Strain fitness (log2 ratio) -2 -1 0 1 2at 600.476 kb on + strandat 600.861 kb on - strand, within yneJat 600.924 kb on - strand, within yneJat 601.117 kb on - strand, within yneJat 601.166 kb on + strand, within yneJat 601.343 kb on - strandat 601.376 kb on - strandat 601.396 kb on - strandat 601.404 kb on + strandat 601.420 kb on - strandat 601.559 kb on + strand, within sadat 601.560 kb on - strand, within sadat 601.883 kb on + strand, within sadat 601.884 kb on - strand, within sadat 601.964 kb on + strand, within sadat 601.964 kb on + strand, within sadat 602.133 kb on + strand, within sadat 602.169 kb on + strand, within sadat 602.443 kb on - strand, within sadat 602.753 kb on + strandat 602.753 kb on + strandat 603.210 kb on + strand, within glsBat 603.210 kb on + strand, within glsBat 603.237 kb on + strand, within glsBat 603.273 kb on + strand, within glsBat 603.273 kb on + strand, within glsBat 603.273 kb on + strand, within glsBat 603.516 kb on + strand, within glsBat 603.588 kb on + strand, within glsBat 603.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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600,476 + +0.9
600,861 - yneJ JDDGAC_03615 0.49 +0.9
600,924 - yneJ JDDGAC_03615 0.56 -1.9
601,117 - yneJ JDDGAC_03615 0.78 -0.4
601,166 + yneJ JDDGAC_03615 0.84 -1.8
601,343 - +0.0
601,376 - +0.7
601,396 - +0.8
601,404 + -0.2
601,420 - -0.6
601,559 + sad JDDGAC_03620 0.11 +0.2
601,560 - sad JDDGAC_03620 0.11 -0.5
601,883 + sad JDDGAC_03620 0.34 -0.6
601,884 - sad JDDGAC_03620 0.34 +2.2
601,964 + sad JDDGAC_03620 0.40 +0.2
601,964 + sad JDDGAC_03620 0.40 -0.6
602,133 + sad JDDGAC_03620 0.52 -0.6
602,169 + sad JDDGAC_03620 0.55 -1.2
602,443 - sad JDDGAC_03620 0.74 +0.2
602,753 + -0.9
602,753 + +0.6
603,210 + glsB JDDGAC_03625 0.37 -0.2
603,210 + glsB JDDGAC_03625 0.37 +1.0
603,237 + glsB JDDGAC_03625 0.40 -0.5
603,273 + glsB JDDGAC_03625 0.44 +0.6
603,273 + glsB JDDGAC_03625 0.44 -2.2
603,273 + glsB JDDGAC_03625 0.44 +0.5
603,516 + glsB JDDGAC_03625 0.70 +0.2
603,588 + glsB JDDGAC_03625 0.78 +2.1
603,787 + -0.3

Or see this region's nucleotide sequence