Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01995

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhP and sodB are separated by 145 nucleotidessodB and mepH are separated by 127 nucleotides JDDGAC_01990: ydhP - Inner membrane transport protein YdhP, at 353,552 to 354,721 ydhP JDDGAC_01995: sodB - superoxide dismutase [Fe], at 354,867 to 355,448 sodB JDDGAC_02000: mepH - peptidoglycan DD-endopeptidase MepH, at 355,576 to 356,391 mepH Position (kb) 354 355 356Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 354.072 kb on + strand, within ydhPat 354.072 kb on + strand, within ydhPat 354.095 kb on - strand, within ydhPat 354.205 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.219 kb on - strand, within ydhPat 354.219 kb on - strand, within ydhPat 354.219 kb on - strand, within ydhPat 354.220 kb on + strand, within ydhPat 354.220 kb on + strand, within ydhPat 354.220 kb on + strand, within ydhPat 354.221 kb on - strand, within ydhPat 354.221 kb on - strand, within ydhPat 354.242 kb on - strand, within ydhPat 354.436 kb on + strand, within ydhPat 354.436 kb on + strand, within ydhPat 354.436 kb on + strand, within ydhPat 354.594 kb on + strand, within ydhPat 354.719 kb on + strandat 354.865 kb on + strandat 354.869 kb on - strandat 354.869 kb on - strandat 354.959 kb on - strand, within sodBat 354.962 kb on - strand, within sodBat 355.220 kb on - strand, within sodBat 355.227 kb on - strand, within sodBat 355.298 kb on + strand, within sodBat 355.298 kb on + strand, within sodBat 355.345 kb on + strand, within sodBat 355.346 kb on - strand, within sodBat 355.415 kb on + strandat 355.420 kb on + strandat 355.434 kb on + strandat 355.435 kb on - strandat 355.453 kb on - strandat 355.477 kb on + strandat 355.478 kb on - strandat 355.635 kb on - strandat 355.690 kb on - strand, within mepHat 355.862 kb on + strand, within mepHat 355.868 kb on + strand, within mepHat 356.059 kb on - strand, within mepHat 356.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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354,072 + ydhP JDDGAC_01990 0.44 +0.8
354,072 + ydhP JDDGAC_01990 0.44 -1.1
354,095 - ydhP JDDGAC_01990 0.46 -1.9
354,205 + ydhP JDDGAC_01990 0.56 +1.3
354,218 + ydhP JDDGAC_01990 0.57 -1.1
354,218 + ydhP JDDGAC_01990 0.57 -0.2
354,218 + ydhP JDDGAC_01990 0.57 -0.6
354,218 + ydhP JDDGAC_01990 0.57 -0.8
354,218 + ydhP JDDGAC_01990 0.57 -0.2
354,219 - ydhP JDDGAC_01990 0.57 +0.1
354,219 - ydhP JDDGAC_01990 0.57 +0.5
354,219 - ydhP JDDGAC_01990 0.57 -0.8
354,220 + ydhP JDDGAC_01990 0.57 -0.5
354,220 + ydhP JDDGAC_01990 0.57 +0.1
354,220 + ydhP JDDGAC_01990 0.57 -0.3
354,221 - ydhP JDDGAC_01990 0.57 -4.5
354,221 - ydhP JDDGAC_01990 0.57 +0.3
354,242 - ydhP JDDGAC_01990 0.59 -1.1
354,436 + ydhP JDDGAC_01990 0.76 +1.0
354,436 + ydhP JDDGAC_01990 0.76 -0.0
354,436 + ydhP JDDGAC_01990 0.76 -0.1
354,594 + ydhP JDDGAC_01990 0.89 -0.1
354,719 + +0.6
354,865 + +1.0
354,869 - -0.6
354,869 - +0.5
354,959 - sodB JDDGAC_01995 0.16 +1.3
354,962 - sodB JDDGAC_01995 0.16 -0.2
355,220 - sodB JDDGAC_01995 0.61 +0.3
355,227 - sodB JDDGAC_01995 0.62 +0.1
355,298 + sodB JDDGAC_01995 0.74 -0.2
355,298 + sodB JDDGAC_01995 0.74 -1.7
355,345 + sodB JDDGAC_01995 0.82 +0.1
355,346 - sodB JDDGAC_01995 0.82 -0.1
355,415 + +0.3
355,420 + +0.5
355,434 + -1.1
355,435 - +2.2
355,453 - -0.2
355,477 + +0.2
355,478 - -0.1
355,635 - +0.2
355,690 - mepH JDDGAC_02000 0.14 +0.5
355,862 + mepH JDDGAC_02000 0.35 +0.5
355,868 + mepH JDDGAC_02000 0.36 +1.6
356,059 - mepH JDDGAC_02000 0.59 +1.2
356,374 - -1.0

Or see this region's nucleotide sequence