Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01695

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbtuD and nlpC are separated by 77 nucleotidesnlpC and ydiV are separated by 246 nucleotidesydiV and selO are separated by 62 nucleotides JDDGAC_01685: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 295,968 to 296,717 btuD JDDGAC_01690: nlpC - putative endopeptidase NlpC, at 296,795 to 297,259 nlpC JDDGAC_01695: ydiV - anti-FlhDC factor, at 297,506 to 298,219 ydiV JDDGAC_01700: selO - protein adenylyltransferase SelO, at 298,282 to 299,718 selO Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 296.727 kb on + strandat 297.142 kb on - strand, within nlpCat 297.169 kb on + strand, within nlpCat 297.214 kb on + strandat 297.257 kb on + strandat 297.258 kb on - strandat 297.260 kb on + strandat 297.441 kb on - strandat 297.739 kb on + strand, within ydiVat 297.819 kb on + strand, within ydiVat 298.049 kb on - strand, within ydiVat 298.188 kb on + strandat 298.197 kb on + strandat 298.281 kb on + strandat 298.281 kb on + strandat 298.330 kb on + strandat 298.381 kb on - strandat 298.384 kb on - strandat 298.396 kb on - strandat 298.470 kb on + strand, within selOat 298.652 kb on + strand, within selOat 298.924 kb on + strand, within selOat 298.967 kb on + strand, within selOat 299.122 kb on + strand, within selO

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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296,727 + +4.0
297,142 - nlpC JDDGAC_01690 0.75 +0.1
297,169 + nlpC JDDGAC_01690 0.80 +0.3
297,214 + -0.1
297,257 + +1.1
297,258 - +2.2
297,260 + -0.0
297,441 - -0.7
297,739 + ydiV JDDGAC_01695 0.33 -1.7
297,819 + ydiV JDDGAC_01695 0.44 -0.4
298,049 - ydiV JDDGAC_01695 0.76 -0.8
298,188 + -2.0
298,197 + +0.1
298,281 + -0.2
298,281 + +0.1
298,330 + +1.0
298,381 - -0.1
298,384 - +0.8
298,396 - +1.9
298,470 + selO JDDGAC_01700 0.13 -0.1
298,652 + selO JDDGAC_01700 0.26 +0.4
298,924 + selO JDDGAC_01700 0.45 +0.4
298,967 + selO JDDGAC_01700 0.48 +0.1
299,122 + selO JDDGAC_01700 0.58 +0.5

Or see this region's nucleotide sequence