Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_00550 and JDDGAC_00555 are separated by 23 nucleotides JDDGAC_00555 and JDDGAC_00560 are separated by 92 nucleotides JDDGAC_00560 and JDDGAC_00565 overlap by 4 nucleotides JDDGAC_00565 and JDDGAC_00570 are separated by 11 nucleotides JDDGAC_00570 and JDDGAC_00575 are separated by 10 nucleotides JDDGAC_00575 and JDDGAC_00580 are separated by 21 nucleotides JDDGAC_00580 and JDDGAC_00585 are separated by 298 nucleotides
JDDGAC_00550: JDDGAC_00550 - hypothetical protein, at 91,394 to 91,597
_00550
JDDGAC_00555: JDDGAC_00555 - Phage protein, at 91,621 to 92,037
_00555
JDDGAC_00560: JDDGAC_00560 - Membrane protein, at 92,130 to 92,243
_00560
JDDGAC_00565: JDDGAC_00565 - DUF4754 domain-containing protein, at 92,240 to 92,482
_00565
JDDGAC_00570: JDDGAC_00570 - hypothetical protein, at 92,494 to 92,772
_00570
JDDGAC_00575: JDDGAC_00575 - DUF4761 domain-containing protein, at 92,783 to 93,133
_00575
JDDGAC_00580: JDDGAC_00580 - DNA-binding protein, at 93,155 to 93,358
_00580
JDDGAC_00585: JDDGAC_00585 - transcriptional regulator, at 93,657 to 94,061
_00585
Position (kb)
92
93 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 91.589 kb on - strand at 91.660 kb on + strand at 92.067 kb on + strand at 92.132 kb on - strand at 92.468 kb on - strand at 92.638 kb on - strand, within JDDGAC_00570 at 92.658 kb on + strand, within JDDGAC_00570 at 92.710 kb on + strand, within JDDGAC_00570 at 92.851 kb on - strand, within JDDGAC_00575 at 92.990 kb on + strand, within JDDGAC_00575 at 92.991 kb on - strand, within JDDGAC_00575 at 93.046 kb on + strand, within JDDGAC_00575 at 93.047 kb on - strand, within JDDGAC_00575 at 93.047 kb on - strand, within JDDGAC_00575 at 93.087 kb on - strand, within JDDGAC_00575 at 93.238 kb on + strand, within JDDGAC_00580 at 93.271 kb on + strand, within JDDGAC_00580 at 93.271 kb on + strand, within JDDGAC_00580 at 93.271 kb on + strand, within JDDGAC_00580 at 93.272 kb on - strand, within JDDGAC_00580 at 93.274 kb on + strand, within JDDGAC_00580 at 93.274 kb on + strand, within JDDGAC_00580 at 93.275 kb on - strand, within JDDGAC_00580 at 93.300 kb on + strand, within JDDGAC_00580 at 93.314 kb on + strand, within JDDGAC_00580 at 93.315 kb on - strand, within JDDGAC_00580 at 93.315 kb on - strand, within JDDGAC_00580 at 93.318 kb on + strand, within JDDGAC_00580 at 93.412 kb on - strand at 93.464 kb on + strand at 93.587 kb on + strand at 93.587 kb on + strand at 93.588 kb on - strand at 93.588 kb on - strand at 93.588 kb on - strand at 93.588 kb on - strand at 93.588 kb on - strand at 93.588 kb on - strand at 93.590 kb on - strand at 93.590 kb on - strand at 93.590 kb on - strand at 93.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 91,589 - -0.8 91,660 + -0.3 92,067 + +2.3 92,132 - +0.6 92,468 - -1.3 92,638 - JDDGAC_00570 0.52 -0.7 92,658 + JDDGAC_00570 0.59 -0.7 92,710 + JDDGAC_00570 0.77 -0.4 92,851 - JDDGAC_00575 0.19 -0.4 92,990 + JDDGAC_00575 0.59 -0.1 92,991 - JDDGAC_00575 0.59 +0.2 93,046 + JDDGAC_00575 0.75 +0.0 93,047 - JDDGAC_00575 0.75 -0.9 93,047 - JDDGAC_00575 0.75 -2.2 93,087 - JDDGAC_00575 0.87 -1.4 93,238 + JDDGAC_00580 0.41 -0.6 93,271 + JDDGAC_00580 0.57 +0.9 93,271 + JDDGAC_00580 0.57 +0.6 93,271 + JDDGAC_00580 0.57 +0.0 93,272 - JDDGAC_00580 0.57 +0.2 93,274 + JDDGAC_00580 0.58 -0.5 93,274 + JDDGAC_00580 0.58 -0.5 93,275 - JDDGAC_00580 0.59 -0.2 93,300 + JDDGAC_00580 0.71 +0.1 93,314 + JDDGAC_00580 0.78 +0.3 93,315 - JDDGAC_00580 0.78 -1.6 93,315 - JDDGAC_00580 0.78 +0.0 93,318 + JDDGAC_00580 0.80 -0.3 93,412 - -0.0 93,464 + +0.0 93,587 + -0.2 93,587 + -1.6 93,588 - +0.5 93,588 - +0.1 93,588 - +0.2 93,588 - -0.6 93,588 - -0.3 93,588 - -0.2 93,590 - -0.5 93,590 - -0.2 93,590 - -0.5 93,590 - +2.0
Or see this region's nucleotide sequence