Strain Fitness in Escherichia coli ECRC98 around JDDGAC_00570

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_00550 and JDDGAC_00555 are separated by 23 nucleotidesJDDGAC_00555 and JDDGAC_00560 are separated by 92 nucleotidesJDDGAC_00560 and JDDGAC_00565 overlap by 4 nucleotidesJDDGAC_00565 and JDDGAC_00570 are separated by 11 nucleotidesJDDGAC_00570 and JDDGAC_00575 are separated by 10 nucleotidesJDDGAC_00575 and JDDGAC_00580 are separated by 21 nucleotidesJDDGAC_00580 and JDDGAC_00585 are separated by 298 nucleotides JDDGAC_00550: JDDGAC_00550 - hypothetical protein, at 91,394 to 91,597 _00550 JDDGAC_00555: JDDGAC_00555 - Phage protein, at 91,621 to 92,037 _00555 JDDGAC_00560: JDDGAC_00560 - Membrane protein, at 92,130 to 92,243 _00560 JDDGAC_00565: JDDGAC_00565 - DUF4754 domain-containing protein, at 92,240 to 92,482 _00565 JDDGAC_00570: JDDGAC_00570 - hypothetical protein, at 92,494 to 92,772 _00570 JDDGAC_00575: JDDGAC_00575 - DUF4761 domain-containing protein, at 92,783 to 93,133 _00575 JDDGAC_00580: JDDGAC_00580 - DNA-binding protein, at 93,155 to 93,358 _00580 JDDGAC_00585: JDDGAC_00585 - transcriptional regulator, at 93,657 to 94,061 _00585 Position (kb) 92 93Strain fitness (log2 ratio) -2 -1 0 1 2at 91.589 kb on - strandat 91.660 kb on + strandat 92.067 kb on + strandat 92.132 kb on - strandat 92.468 kb on - strandat 92.638 kb on - strand, within JDDGAC_00570at 92.658 kb on + strand, within JDDGAC_00570at 92.710 kb on + strand, within JDDGAC_00570at 92.851 kb on - strand, within JDDGAC_00575at 92.990 kb on + strand, within JDDGAC_00575at 92.991 kb on - strand, within JDDGAC_00575at 93.046 kb on + strand, within JDDGAC_00575at 93.047 kb on - strand, within JDDGAC_00575at 93.047 kb on - strand, within JDDGAC_00575at 93.087 kb on - strand, within JDDGAC_00575at 93.238 kb on + strand, within JDDGAC_00580at 93.271 kb on + strand, within JDDGAC_00580at 93.271 kb on + strand, within JDDGAC_00580at 93.271 kb on + strand, within JDDGAC_00580at 93.272 kb on - strand, within JDDGAC_00580at 93.274 kb on + strand, within JDDGAC_00580at 93.274 kb on + strand, within JDDGAC_00580at 93.275 kb on - strand, within JDDGAC_00580at 93.300 kb on + strand, within JDDGAC_00580at 93.314 kb on + strand, within JDDGAC_00580at 93.315 kb on - strand, within JDDGAC_00580at 93.315 kb on - strand, within JDDGAC_00580at 93.318 kb on + strand, within JDDGAC_00580at 93.412 kb on - strandat 93.464 kb on + strandat 93.587 kb on + strandat 93.587 kb on + strandat 93.588 kb on - strandat 93.588 kb on - strandat 93.588 kb on - strandat 93.588 kb on - strandat 93.588 kb on - strandat 93.588 kb on - strandat 93.590 kb on - strandat 93.590 kb on - strandat 93.590 kb on - strandat 93.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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91,589 - -0.8
91,660 + -0.3
92,067 + +2.3
92,132 - +0.6
92,468 - -1.3
92,638 - JDDGAC_00570 0.52 -0.7
92,658 + JDDGAC_00570 0.59 -0.7
92,710 + JDDGAC_00570 0.77 -0.4
92,851 - JDDGAC_00575 0.19 -0.4
92,990 + JDDGAC_00575 0.59 -0.1
92,991 - JDDGAC_00575 0.59 +0.2
93,046 + JDDGAC_00575 0.75 +0.0
93,047 - JDDGAC_00575 0.75 -0.9
93,047 - JDDGAC_00575 0.75 -2.2
93,087 - JDDGAC_00575 0.87 -1.4
93,238 + JDDGAC_00580 0.41 -0.6
93,271 + JDDGAC_00580 0.57 +0.9
93,271 + JDDGAC_00580 0.57 +0.6
93,271 + JDDGAC_00580 0.57 +0.0
93,272 - JDDGAC_00580 0.57 +0.2
93,274 + JDDGAC_00580 0.58 -0.5
93,274 + JDDGAC_00580 0.58 -0.5
93,275 - JDDGAC_00580 0.59 -0.2
93,300 + JDDGAC_00580 0.71 +0.1
93,314 + JDDGAC_00580 0.78 +0.3
93,315 - JDDGAC_00580 0.78 -1.6
93,315 - JDDGAC_00580 0.78 +0.0
93,318 + JDDGAC_00580 0.80 -0.3
93,412 - -0.0
93,464 + +0.0
93,587 + -0.2
93,587 + -1.6
93,588 - +0.5
93,588 - +0.1
93,588 - +0.2
93,588 - -0.6
93,588 - -0.3
93,588 - -0.2
93,590 - -0.5
93,590 - -0.2
93,590 - -0.5
93,590 - +2.0

Or see this region's nucleotide sequence