Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_29985 and yubD are separated by 385 nucleotides yubD and JDDGAC_29995 are separated by 0 nucleotides JDDGAC_29995 and yubF are separated by 13 nucleotides yubF and yubG are separated by 45 nucleotides
JDDGAC_29985: JDDGAC_29985 - DUF1281 domain-containing protein, at 22,332 to 23,258
_29985
JDDGAC_29990: yubD - Putative methylase YubD, at 23,644 to 24,327
yubD
JDDGAC_29995: JDDGAC_29995 - hypothetical protein, at 24,328 to 24,549
_29995
JDDGAC_30000: yubF - Uncharacterized protein YubF, at 24,563 to 24,997
yubF
JDDGAC_30005: yubG - Uncharacterized protein YubG, at 25,043 to 25,819
yubG
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.760 kb on + strand, within JDDGAC_29985 at 22.771 kb on + strand, within JDDGAC_29985 at 22.771 kb on + strand, within JDDGAC_29985 at 22.771 kb on + strand, within JDDGAC_29985 at 22.771 kb on + strand, within JDDGAC_29985 at 22.771 kb on + strand, within JDDGAC_29985 at 22.772 kb on - strand, within JDDGAC_29985 at 22.914 kb on + strand, within JDDGAC_29985 at 22.923 kb on + strand, within JDDGAC_29985 at 22.959 kb on + strand, within JDDGAC_29985 at 22.970 kb on + strand, within JDDGAC_29985 at 23.053 kb on + strand, within JDDGAC_29985 at 23.054 kb on - strand, within JDDGAC_29985 at 23.262 kb on - strand at 23.413 kb on - strand at 23.497 kb on + strand at 23.626 kb on - strand at 23.643 kb on + strand at 23.643 kb on + strand at 23.643 kb on + strand at 23.656 kb on - strand at 23.731 kb on + strand, within yubD at 23.732 kb on - strand, within yubD at 23.763 kb on + strand, within yubD at 23.763 kb on + strand, within yubD at 23.763 kb on + strand, within yubD at 23.818 kb on + strand, within yubD at 23.857 kb on + strand, within yubD at 23.858 kb on - strand, within yubD at 23.944 kb on + strand, within yubD at 23.945 kb on - strand, within yubD at 23.945 kb on - strand, within yubD at 23.962 kb on + strand, within yubD at 23.962 kb on + strand, within yubD at 23.963 kb on - strand, within yubD at 23.963 kb on - strand, within yubD at 23.989 kb on + strand, within yubD at 24.233 kb on - strand, within yubD at 24.326 kb on - strand at 24.508 kb on + strand, within JDDGAC_29995 at 24.508 kb on + strand, within JDDGAC_29995 at 24.567 kb on - strand at 24.586 kb on - strand at 24.619 kb on + strand, within yubF at 24.619 kb on + strand, within yubF at 24.619 kb on + strand, within yubF at 24.637 kb on + strand, within yubF at 24.763 kb on + strand, within yubF at 25.038 kb on + strand at 25.151 kb on + strand, within yubG at 25.152 kb on - strand, within yubG at 25.172 kb on + strand, within yubG at 25.173 kb on - strand, within yubG at 25.206 kb on + strand, within yubG
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 22,760 + JDDGAC_29985 0.46 +1.0 22,771 + JDDGAC_29985 0.47 -0.4 22,771 + JDDGAC_29985 0.47 -0.0 22,771 + JDDGAC_29985 0.47 +0.2 22,771 + JDDGAC_29985 0.47 -1.3 22,771 + JDDGAC_29985 0.47 -0.1 22,772 - JDDGAC_29985 0.47 +0.9 22,914 + JDDGAC_29985 0.63 -0.0 22,923 + JDDGAC_29985 0.64 +0.7 22,959 + JDDGAC_29985 0.68 -0.4 22,970 + JDDGAC_29985 0.69 -0.1 23,053 + JDDGAC_29985 0.78 +0.1 23,054 - JDDGAC_29985 0.78 -0.1 23,262 - -0.2 23,413 - -0.1 23,497 + -0.4 23,626 - +0.5 23,643 + +0.3 23,643 + -0.8 23,643 + +0.5 23,656 - +0.3 23,731 + yubD JDDGAC_29990 0.13 -0.0 23,732 - yubD JDDGAC_29990 0.13 +0.2 23,763 + yubD JDDGAC_29990 0.17 -0.9 23,763 + yubD JDDGAC_29990 0.17 +0.2 23,763 + yubD JDDGAC_29990 0.17 -0.7 23,818 + yubD JDDGAC_29990 0.25 -1.5 23,857 + yubD JDDGAC_29990 0.31 -1.1 23,858 - yubD JDDGAC_29990 0.31 +0.4 23,944 + yubD JDDGAC_29990 0.44 +0.3 23,945 - yubD JDDGAC_29990 0.44 -0.0 23,945 - yubD JDDGAC_29990 0.44 -0.3 23,962 + yubD JDDGAC_29990 0.46 -0.0 23,962 + yubD JDDGAC_29990 0.46 -1.8 23,963 - yubD JDDGAC_29990 0.47 -1.1 23,963 - yubD JDDGAC_29990 0.47 -0.4 23,989 + yubD JDDGAC_29990 0.50 -0.3 24,233 - yubD JDDGAC_29990 0.86 -1.6 24,326 - -0.8 24,508 + JDDGAC_29995 0.81 +1.7 24,508 + JDDGAC_29995 0.81 +0.1 24,567 - +1.3 24,586 - +2.6 24,619 + yubF JDDGAC_30000 0.13 -0.7 24,619 + yubF JDDGAC_30000 0.13 -0.8 24,619 + yubF JDDGAC_30000 0.13 -0.0 24,637 + yubF JDDGAC_30000 0.17 +0.1 24,763 + yubF JDDGAC_30000 0.46 -0.4 25,038 + +1.5 25,151 + yubG JDDGAC_30005 0.14 +0.0 25,152 - yubG JDDGAC_30005 0.14 +0.2 25,172 + yubG JDDGAC_30005 0.17 +0.3 25,173 - yubG JDDGAC_30005 0.17 -1.0 25,206 + yubG JDDGAC_30005 0.21 -0.3
Or see this region's nucleotide sequence