Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt maeB and eutS are separated by 292 nucleotides eutS and eutP are separated by 12 nucleotides eutP and eutQ overlap by 26 nucleotides
JDDGAC_25950: maeB - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 4,965,346 to 4,967,625
maeB
JDDGAC_25955: eutS - Bacterial microcompartment shell protein EutS, at 4,967,918 to 4,968,253
eutS
JDDGAC_25960: eutP - ethanolamine utilization acetate kinase EutP, at 4,968,266 to 4,968,745
eutP
JDDGAC_25965: eutQ - ethanolamine utilization acetate kinase EutQ, at 4,968,720 to 4,969,421
eutQ
Position (kb) 4967
4968
4969 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4967.023 kb on + strand, within maeB at 4967.127 kb on + strand, within maeB at 4967.140 kb on + strand, within maeB at 4967.624 kb on - strand at 4967.686 kb on - strand at 4967.689 kb on - strand at 4968.047 kb on - strand, within eutS at 4968.054 kb on + strand, within eutS at 4968.156 kb on - strand, within eutS at 4968.226 kb on + strand at 4968.254 kb on + strand at 4968.340 kb on + strand, within eutP at 4968.473 kb on + strand, within eutP at 4968.474 kb on - strand, within eutP at 4968.562 kb on + strand, within eutP at 4968.645 kb on + strand, within eutP at 4968.646 kb on - strand, within eutP at 4968.746 kb on + strand at 4968.806 kb on + strand, within eutQ at 4968.806 kb on + strand, within eutQ at 4968.806 kb on + strand, within eutQ at 4968.807 kb on - strand, within eutQ at 4968.807 kb on - strand, within eutQ at 4968.807 kb on - strand, within eutQ at 4968.839 kb on - strand, within eutQ at 4968.848 kb on + strand, within eutQ at 4968.849 kb on - strand, within eutQ at 4969.101 kb on - strand, within eutQ at 4969.202 kb on + strand, within eutQ at 4969.202 kb on + strand, within eutQ at 4969.203 kb on - strand, within eutQ at 4969.242 kb on + strand, within eutQ at 4969.243 kb on - strand, within eutQ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,967,023 + maeB JDDGAC_25950 0.74 -1.2 4,967,127 + maeB JDDGAC_25950 0.78 -1.0 4,967,140 + maeB JDDGAC_25950 0.79 +0.3 4,967,624 - +0.3 4,967,686 - -0.9 4,967,689 - -1.4 4,968,047 - eutS JDDGAC_25955 0.38 +1.4 4,968,054 + eutS JDDGAC_25955 0.40 -0.0 4,968,156 - eutS JDDGAC_25955 0.71 -3.1 4,968,226 + -0.2 4,968,254 + -0.5 4,968,340 + eutP JDDGAC_25960 0.15 -0.8 4,968,473 + eutP JDDGAC_25960 0.43 +0.2 4,968,474 - eutP JDDGAC_25960 0.43 -1.5 4,968,562 + eutP JDDGAC_25960 0.62 +0.1 4,968,645 + eutP JDDGAC_25960 0.79 +0.2 4,968,646 - eutP JDDGAC_25960 0.79 +0.9 4,968,746 + +0.5 4,968,806 + eutQ JDDGAC_25965 0.12 -2.0 4,968,806 + eutQ JDDGAC_25965 0.12 +0.1 4,968,806 + eutQ JDDGAC_25965 0.12 -0.4 4,968,807 - eutQ JDDGAC_25965 0.12 +0.5 4,968,807 - eutQ JDDGAC_25965 0.12 +0.5 4,968,807 - eutQ JDDGAC_25965 0.12 -0.5 4,968,839 - eutQ JDDGAC_25965 0.17 +0.2 4,968,848 + eutQ JDDGAC_25965 0.18 +0.3 4,968,849 - eutQ JDDGAC_25965 0.18 -0.1 4,969,101 - eutQ JDDGAC_25965 0.54 +0.3 4,969,202 + eutQ JDDGAC_25965 0.69 -1.5 4,969,202 + eutQ JDDGAC_25965 0.69 -0.4 4,969,203 - eutQ JDDGAC_25965 0.69 -0.4 4,969,242 + eutQ JDDGAC_25965 0.74 +0.4 4,969,243 - eutQ JDDGAC_25965 0.75 +0.6
Or see this region's nucleotide sequence