Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tra8 and JDDGAC_24675 are separated by 244 nucleotides JDDGAC_24675 and JDDGAC_24680 overlap by 8 nucleotides JDDGAC_24680 and JDDGAC_24685 overlap by 26 nucleotides JDDGAC_24685 and JDDGAC_24690 overlap by 4 nucleotides JDDGAC_24690 and JDDGAC_24695 overlap by 4 nucleotides
JDDGAC_24670: tra8 - IS30 family transposase, at 4,729,436 to 4,730,191
tra8
JDDGAC_24675: JDDGAC_24675 - hypothetical protein, at 4,730,436 to 4,730,552
_24675
JDDGAC_24680: JDDGAC_24680 - endonuclease, at 4,730,545 to 4,731,111
_24680
JDDGAC_24685: JDDGAC_24685 - protein NinG, at 4,731,086 to 4,731,697
_24685
JDDGAC_24690: JDDGAC_24690 - Serine/threonine-protein phosphatase, at 4,731,694 to 4,732,359
_24690
JDDGAC_24695: JDDGAC_24695 - Antitermination protein Q, at 4,732,356 to 4,732,979
_24695
Position (kb) 4731
4732 Strain fitness (log2 ratio) -2
-1
0
1 at 4730.269 kb on - strand at 4730.483 kb on + strand, within JDDGAC_24675 at 4730.572 kb on - strand at 4730.675 kb on + strand, within JDDGAC_24680 at 4730.836 kb on - strand, within JDDGAC_24680 at 4730.982 kb on + strand, within JDDGAC_24680 at 4731.023 kb on + strand, within JDDGAC_24680 at 4731.023 kb on + strand, within JDDGAC_24680 at 4731.045 kb on + strand, within JDDGAC_24680 at 4731.046 kb on - strand, within JDDGAC_24680 at 4731.049 kb on + strand, within JDDGAC_24680 at 4731.049 kb on + strand, within JDDGAC_24680 at 4731.050 kb on - strand, within JDDGAC_24680 at 4731.050 kb on - strand, within JDDGAC_24680 at 4731.052 kb on + strand, within JDDGAC_24680 at 4731.160 kb on + strand, within JDDGAC_24685 at 4732.507 kb on + strand, within JDDGAC_24695 at 4732.507 kb on + strand, within JDDGAC_24695 at 4732.518 kb on - strand, within JDDGAC_24695 at 4732.518 kb on - strand, within JDDGAC_24695 at 4732.561 kb on - strand, within JDDGAC_24695 at 4732.561 kb on - strand, within JDDGAC_24695 at 4732.561 kb on - strand, within JDDGAC_24695 at 4732.626 kb on - strand, within JDDGAC_24695 at 4732.626 kb on - strand, within JDDGAC_24695 at 4732.665 kb on + strand, within JDDGAC_24695
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,730,269 - +0.4 4,730,483 + JDDGAC_24675 0.40 -0.3 4,730,572 - -0.1 4,730,675 + JDDGAC_24680 0.23 -0.7 4,730,836 - JDDGAC_24680 0.51 -1.0 4,730,982 + JDDGAC_24680 0.77 +0.5 4,731,023 + JDDGAC_24680 0.84 -0.4 4,731,023 + JDDGAC_24680 0.84 -0.1 4,731,045 + JDDGAC_24680 0.88 +0.4 4,731,046 - JDDGAC_24680 0.88 -0.9 4,731,049 + JDDGAC_24680 0.89 +0.1 4,731,049 + JDDGAC_24680 0.89 -0.0 4,731,050 - JDDGAC_24680 0.89 +0.2 4,731,050 - JDDGAC_24680 0.89 -0.8 4,731,052 + JDDGAC_24680 0.89 -1.9 4,731,160 + JDDGAC_24685 0.12 -1.1 4,732,507 + JDDGAC_24695 0.24 -1.6 4,732,507 + JDDGAC_24695 0.24 +0.0 4,732,518 - JDDGAC_24695 0.26 -0.4 4,732,518 - JDDGAC_24695 0.26 +0.3 4,732,561 - JDDGAC_24695 0.33 -0.2 4,732,561 - JDDGAC_24695 0.33 -0.3 4,732,561 - JDDGAC_24695 0.33 +0.6 4,732,626 - JDDGAC_24695 0.43 -0.0 4,732,626 - JDDGAC_24695 0.43 -0.8 4,732,665 + JDDGAC_24695 0.50 +0.1
Or see this region's nucleotide sequence