Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hycE and hycF are separated by 9 nucleotides hycF and hycG overlap by 1 nucleotides hycG and hycH overlap by 4 nucleotides
JDDGAC_24255: hycE - formate hydrogenlyase subunit HycE, at 4,650,273 to 4,651,982
hycE
JDDGAC_24260: hycF - formate hydrogenlyase subunit HycF, at 4,651,992 to 4,652,534
hycF
JDDGAC_24265: hycG - formate hydrogenlyase subunit HycG, at 4,652,534 to 4,653,301
hycG
JDDGAC_24270: hycH - formate hydrogenlyase assembly protein HycH, at 4,653,298 to 4,653,708
hycH
Position (kb) 4651
4652
4653 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4651.055 kb on + strand, within hycE at 4651.105 kb on + strand, within hycE at 4651.105 kb on + strand, within hycE at 4651.553 kb on + strand, within hycE at 4651.554 kb on - strand, within hycE at 4651.575 kb on - strand, within hycE at 4651.575 kb on - strand, within hycE at 4651.578 kb on - strand, within hycE at 4651.578 kb on - strand, within hycE at 4651.587 kb on + strand, within hycE at 4651.587 kb on + strand, within hycE at 4651.588 kb on - strand, within hycE at 4651.588 kb on - strand, within hycE at 4651.588 kb on - strand, within hycE at 4651.588 kb on - strand, within hycE at 4651.590 kb on - strand, within hycE at 4651.612 kb on - strand, within hycE at 4651.612 kb on - strand, within hycE at 4651.659 kb on - strand, within hycE at 4651.659 kb on - strand, within hycE at 4651.803 kb on + strand, within hycE at 4651.803 kb on + strand, within hycE at 4651.804 kb on - strand, within hycE at 4651.851 kb on - strand at 4651.866 kb on + strand at 4651.867 kb on - strand at 4651.867 kb on - strand at 4651.980 kb on + strand at 4652.402 kb on + strand, within hycF at 4652.403 kb on - strand, within hycF at 4652.465 kb on + strand, within hycF at 4652.544 kb on + strand at 4652.544 kb on + strand at 4652.545 kb on - strand at 4652.547 kb on + strand at 4652.622 kb on + strand, within hycG at 4652.648 kb on + strand, within hycG at 4652.778 kb on + strand, within hycG at 4652.909 kb on + strand, within hycG at 4652.954 kb on + strand, within hycG at 4652.954 kb on + strand, within hycG at 4652.954 kb on + strand, within hycG at 4652.954 kb on + strand, within hycG at 4652.955 kb on - strand, within hycG at 4652.955 kb on - strand, within hycG at 4652.955 kb on - strand, within hycG at 4652.955 kb on - strand, within hycG at 4652.956 kb on + strand, within hycG at 4652.957 kb on - strand, within hycG at 4653.181 kb on + strand, within hycG at 4653.181 kb on + strand, within hycG at 4653.181 kb on + strand, within hycG at 4653.181 kb on + strand, within hycG at 4653.181 kb on + strand, within hycG at 4653.189 kb on + strand, within hycG at 4653.385 kb on + strand, within hycH at 4653.385 kb on + strand, within hycH at 4653.385 kb on + strand, within hycH at 4653.385 kb on + strand, within hycH at 4653.386 kb on - strand, within hycH at 4653.388 kb on + strand, within hycH at 4653.388 kb on + strand, within hycH at 4653.389 kb on - strand, within hycH at 4653.389 kb on - strand, within hycH at 4653.464 kb on - strand, within hycH at 4653.532 kb on + strand, within hycH at 4653.533 kb on - strand, within hycH at 4653.533 kb on - strand, within hycH
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 4,651,055 + hycE JDDGAC_24255 0.46 -1.9 4,651,105 + hycE JDDGAC_24255 0.49 -0.1 4,651,105 + hycE JDDGAC_24255 0.49 +0.3 4,651,553 + hycE JDDGAC_24255 0.75 +0.2 4,651,554 - hycE JDDGAC_24255 0.75 +0.2 4,651,575 - hycE JDDGAC_24255 0.76 +0.5 4,651,575 - hycE JDDGAC_24255 0.76 -0.0 4,651,578 - hycE JDDGAC_24255 0.76 +0.6 4,651,578 - hycE JDDGAC_24255 0.76 -0.0 4,651,587 + hycE JDDGAC_24255 0.77 -2.2 4,651,587 + hycE JDDGAC_24255 0.77 -0.4 4,651,588 - hycE JDDGAC_24255 0.77 -0.1 4,651,588 - hycE JDDGAC_24255 0.77 -0.0 4,651,588 - hycE JDDGAC_24255 0.77 -0.2 4,651,588 - hycE JDDGAC_24255 0.77 -0.9 4,651,590 - hycE JDDGAC_24255 0.77 -0.2 4,651,612 - hycE JDDGAC_24255 0.78 +0.4 4,651,612 - hycE JDDGAC_24255 0.78 +0.5 4,651,659 - hycE JDDGAC_24255 0.81 +0.7 4,651,659 - hycE JDDGAC_24255 0.81 +0.7 4,651,803 + hycE JDDGAC_24255 0.89 -0.8 4,651,803 + hycE JDDGAC_24255 0.89 +0.0 4,651,804 - hycE JDDGAC_24255 0.90 +0.1 4,651,851 - -0.3 4,651,866 + +0.3 4,651,867 - -0.0 4,651,867 - +0.3 4,651,980 + -0.2 4,652,402 + hycF JDDGAC_24260 0.76 -0.1 4,652,403 - hycF JDDGAC_24260 0.76 -1.3 4,652,465 + hycF JDDGAC_24260 0.87 -0.3 4,652,544 + -0.5 4,652,544 + +0.2 4,652,545 - -0.1 4,652,547 + -0.2 4,652,622 + hycG JDDGAC_24265 0.11 -1.7 4,652,648 + hycG JDDGAC_24265 0.15 -0.3 4,652,778 + hycG JDDGAC_24265 0.32 -0.3 4,652,909 + hycG JDDGAC_24265 0.49 -0.4 4,652,954 + hycG JDDGAC_24265 0.55 +0.1 4,652,954 + hycG JDDGAC_24265 0.55 -1.9 4,652,954 + hycG JDDGAC_24265 0.55 -0.4 4,652,954 + hycG JDDGAC_24265 0.55 -0.3 4,652,955 - hycG JDDGAC_24265 0.55 +0.0 4,652,955 - hycG JDDGAC_24265 0.55 +0.4 4,652,955 - hycG JDDGAC_24265 0.55 +0.7 4,652,955 - hycG JDDGAC_24265 0.55 -0.1 4,652,956 + hycG JDDGAC_24265 0.55 -0.0 4,652,957 - hycG JDDGAC_24265 0.55 -0.4 4,653,181 + hycG JDDGAC_24265 0.84 -1.2 4,653,181 + hycG JDDGAC_24265 0.84 +0.6 4,653,181 + hycG JDDGAC_24265 0.84 +0.1 4,653,181 + hycG JDDGAC_24265 0.84 +1.7 4,653,181 + hycG JDDGAC_24265 0.84 +0.5 4,653,189 + hycG JDDGAC_24265 0.85 +0.5 4,653,385 + hycH JDDGAC_24270 0.21 +0.5 4,653,385 + hycH JDDGAC_24270 0.21 +0.7 4,653,385 + hycH JDDGAC_24270 0.21 +0.8 4,653,385 + hycH JDDGAC_24270 0.21 +0.2 4,653,386 - hycH JDDGAC_24270 0.21 +0.5 4,653,388 + hycH JDDGAC_24270 0.22 +1.1 4,653,388 + hycH JDDGAC_24270 0.22 +0.6 4,653,389 - hycH JDDGAC_24270 0.22 +0.1 4,653,389 - hycH JDDGAC_24270 0.22 -2.9 4,653,464 - hycH JDDGAC_24270 0.40 -0.1 4,653,532 + hycH JDDGAC_24270 0.57 -0.8 4,653,533 - hycH JDDGAC_24270 0.57 -0.1 4,653,533 - hycH JDDGAC_24270 0.57 -0.2
Or see this region's nucleotide sequence