Strain Fitness in Escherichia coli ECRC98 around JDDGAC_19415

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntehaG and JDDGAC_19415 are separated by 43 nucleotidesJDDGAC_19415 and yibL are separated by 644 nucleotides JDDGAC_19410: ehaG - trimeric autotransporter adhesin EhaG, at 3,694,134 to 3,698,900 ehaG JDDGAC_19415: JDDGAC_19415 - DUF3251 domain-containing protein, at 3,698,944 to 3,699,525 _19415 JDDGAC_19420: yibL - YibL family ribosome-associated protein, at 3,700,170 to 3,700,532 yibL Position (kb) 3698 3699 3700Strain fitness (log2 ratio) -1 0 1at 3697.958 kb on + strand, within ehaGat 3698.018 kb on + strand, within ehaGat 3698.085 kb on - strand, within ehaGat 3698.123 kb on + strand, within ehaGat 3698.123 kb on + strand, within ehaGat 3698.123 kb on + strand, within ehaGat 3698.124 kb on - strand, within ehaGat 3698.165 kb on + strand, within ehaGat 3698.165 kb on + strand, within ehaGat 3698.165 kb on + strand, within ehaGat 3698.165 kb on + strand, within ehaGat 3698.166 kb on - strand, within ehaGat 3698.166 kb on - strand, within ehaGat 3698.166 kb on - strand, within ehaGat 3698.168 kb on + strand, within ehaGat 3698.236 kb on - strand, within ehaGat 3698.327 kb on + strand, within ehaGat 3698.328 kb on - strand, within ehaGat 3698.328 kb on - strand, within ehaGat 3698.328 kb on - strand, within ehaGat 3698.333 kb on + strand, within ehaGat 3698.342 kb on + strand, within ehaGat 3698.411 kb on + strand, within ehaGat 3698.411 kb on + strand, within ehaGat 3698.412 kb on - strand, within ehaGat 3698.412 kb on - strand, within ehaGat 3698.420 kb on + strand, within ehaGat 3698.495 kb on + strandat 3698.496 kb on - strandat 3698.522 kb on + strandat 3698.582 kb on + strandat 3698.582 kb on + strandat 3698.583 kb on - strandat 3698.583 kb on - strandat 3698.583 kb on - strandat 3698.583 kb on - strandat 3698.584 kb on + strandat 3698.585 kb on - strandat 3698.598 kb on + strandat 3698.598 kb on + strandat 3698.598 kb on + strandat 3698.599 kb on - strandat 3698.599 kb on - strandat 3698.600 kb on + strandat 3698.600 kb on + strandat 3698.643 kb on - strandat 3698.671 kb on - strandat 3698.672 kb on + strandat 3698.673 kb on - strandat 3698.673 kb on - strandat 3698.707 kb on + strandat 3698.853 kb on - strandat 3698.854 kb on + strandat 3698.854 kb on + strandat 3698.925 kb on - strandat 3698.926 kb on + strandat 3699.192 kb on + strand, within JDDGAC_19415at 3699.220 kb on + strand, within JDDGAC_19415at 3699.387 kb on + strand, within JDDGAC_19415at 3699.504 kb on + strandat 3699.683 kb on + strandat 3699.982 kb on + strandat 3699.999 kb on + strandat 3700.079 kb on - strandat 3700.144 kb on - strandat 3700.144 kb on - strandat 3700.184 kb on + strandat 3700.430 kb on - strand, within yibL

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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3,697,958 + ehaG JDDGAC_19410 0.80 -1.0
3,698,018 + ehaG JDDGAC_19410 0.81 +0.2
3,698,085 - ehaG JDDGAC_19410 0.83 -0.1
3,698,123 + ehaG JDDGAC_19410 0.84 +0.2
3,698,123 + ehaG JDDGAC_19410 0.84 -0.5
3,698,123 + ehaG JDDGAC_19410 0.84 +0.5
3,698,124 - ehaG JDDGAC_19410 0.84 +0.3
3,698,165 + ehaG JDDGAC_19410 0.85 -0.5
3,698,165 + ehaG JDDGAC_19410 0.85 -0.1
3,698,165 + ehaG JDDGAC_19410 0.85 -0.3
3,698,165 + ehaG JDDGAC_19410 0.85 +0.4
3,698,166 - ehaG JDDGAC_19410 0.85 -0.8
3,698,166 - ehaG JDDGAC_19410 0.85 +0.0
3,698,166 - ehaG JDDGAC_19410 0.85 -0.2
3,698,168 + ehaG JDDGAC_19410 0.85 +0.2
3,698,236 - ehaG JDDGAC_19410 0.86 +0.6
3,698,327 + ehaG JDDGAC_19410 0.88 -0.5
3,698,328 - ehaG JDDGAC_19410 0.88 -0.3
3,698,328 - ehaG JDDGAC_19410 0.88 +0.5
3,698,328 - ehaG JDDGAC_19410 0.88 -0.1
3,698,333 + ehaG JDDGAC_19410 0.88 -0.2
3,698,342 + ehaG JDDGAC_19410 0.88 -0.4
3,698,411 + ehaG JDDGAC_19410 0.90 -0.3
3,698,411 + ehaG JDDGAC_19410 0.90 -0.2
3,698,412 - ehaG JDDGAC_19410 0.90 +0.2
3,698,412 - ehaG JDDGAC_19410 0.90 -0.2
3,698,420 + ehaG JDDGAC_19410 0.90 -0.4
3,698,495 + -0.2
3,698,496 - +0.2
3,698,522 + -0.8
3,698,582 + -0.2
3,698,582 + -0.1
3,698,583 - -1.3
3,698,583 - +1.3
3,698,583 - -0.7
3,698,583 - +0.3
3,698,584 + +0.5
3,698,585 - +0.4
3,698,598 + -0.9
3,698,598 + +0.4
3,698,598 + -1.0
3,698,599 - +0.4
3,698,599 - -0.0
3,698,600 + +1.7
3,698,600 + -0.3
3,698,643 - +0.0
3,698,671 - -0.8
3,698,672 + -0.7
3,698,673 - +0.5
3,698,673 - -1.1
3,698,707 + +0.8
3,698,853 - -0.2
3,698,854 + -0.4
3,698,854 + +1.1
3,698,925 - +0.1
3,698,926 + -0.5
3,699,192 + JDDGAC_19415 0.43 +1.1
3,699,220 + JDDGAC_19415 0.47 -0.8
3,699,387 + JDDGAC_19415 0.76 +1.1
3,699,504 + +0.7
3,699,683 + -0.6
3,699,982 + +0.3
3,699,999 + -0.8
3,700,079 - +0.1
3,700,144 - +0.0
3,700,144 - +1.0
3,700,184 + +0.3
3,700,430 - yibL JDDGAC_19420 0.72 +0.1

Or see this region's nucleotide sequence