Strain Fitness in Escherichia coli ECRC98 around JDDGAC_17475

Experiment: WM_K30

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_K30
3,312,052	-	cpxP	JDDGAC_17465	0.71	+0.1
3,312,065	+	cpxP	JDDGAC_17465	0.73	+0.5
3,312,065	+	cpxP	JDDGAC_17465	0.73	-1.1
3,312,065	+	cpxP	JDDGAC_17465	0.73	-0.2
3,312,066	-	cpxP	JDDGAC_17465	0.74	-0.1
3,312,077	+	cpxP	JDDGAC_17465	0.76	-0.6
3,312,078	-	cpxP	JDDGAC_17465	0.76	+2.4
3,312,090	-	cpxP	JDDGAC_17465	0.78	-0.3
3,312,186	-				-1.3
3,312,189	+				+0.0
3,312,189	+				+0.6
3,312,189	+				+0.1
3,312,189	+				-0.2
3,312,190	-				+0.7
3,312,190	-				+0.4
3,312,190	-				-0.3
3,312,190	-				-1.4
3,312,244	+				+0.5
3,312,278	+				+0.3
3,312,288	+				+0.1
3,312,288	+				-0.4
3,312,289	-				+0.3
3,312,289	-				-0.6
3,312,289	-				+0.7
3,312,301	+				-1.5
3,312,337	+				-0.7
3,312,353	-				+0.9
3,312,363	+				+0.7
3,312,396	+				+0.7
3,312,397	-				+0.3
3,312,397	-				-1.5
3,312,487	-	cpxR	JDDGAC_17470	0.20	+0.0
3,312,501	+	cpxR	JDDGAC_17470	0.22	-1.1
3,312,502	-	cpxR	JDDGAC_17470	0.22	-2.5
3,312,571	+	cpxR	JDDGAC_17470	0.32	+0.6
3,312,571	+	cpxR	JDDGAC_17470	0.32	-0.1
3,312,572	-	cpxR	JDDGAC_17470	0.32	+0.1
3,312,676	+	cpxR	JDDGAC_17470	0.47	+1.0
3,312,676	+	cpxR	JDDGAC_17470	0.47	+0.9
3,312,762	+	cpxR	JDDGAC_17470	0.59	+1.1
3,312,762	+	cpxR	JDDGAC_17470	0.59	-0.3
3,312,762	+	cpxR	JDDGAC_17470	0.59	+0.6
3,312,765	+	cpxR	JDDGAC_17470	0.60	+1.0
3,312,843	-	cpxR	JDDGAC_17470	0.71	-1.0
3,312,888	+	cpxR	JDDGAC_17470	0.77	-0.6
3,312,888	+	cpxR	JDDGAC_17470	0.77	-0.3
3,312,941	-	cpxR	JDDGAC_17470	0.85	-0.5
3,313,022	+				+0.9
3,313,046	+				+0.4
3,313,056	-				-0.2
3,313,122	-				+1.6
3,313,235	+	cpxA	JDDGAC_17475	0.14	-0.6
3,313,235	+	cpxA	JDDGAC_17475	0.14	+1.3
3,313,235	+	cpxA	JDDGAC_17475	0.14	+0.3
3,313,458	+	cpxA	JDDGAC_17475	0.30	+0.1
3,313,462	+	cpxA	JDDGAC_17475	0.31	+0.4
3,313,513	-	cpxA	JDDGAC_17475	0.34	+0.8
3,313,517	+	cpxA	JDDGAC_17475	0.35	-1.1
3,313,615	-	cpxA	JDDGAC_17475	0.42	-0.9
3,313,717	-	cpxA	JDDGAC_17475	0.49	-1.8
3,313,869	+	cpxA	JDDGAC_17475	0.60	-1.0
3,314,043	+	cpxA	JDDGAC_17475	0.73	-1.3
3,314,043	+	cpxA	JDDGAC_17475	0.73	+0.3
3,314,044	-	cpxA	JDDGAC_17475	0.73	-1.2
3,314,170	-	cpxA	JDDGAC_17475	0.82	+0.3
3,314,187	+	cpxA	JDDGAC_17475	0.83	-2.1
3,314,401	+				-0.2
3,314,404	-				+0.4
3,314,414	-				+0.1
3,314,414	-				-0.2
3,314,499	+				-2.1
3,314,523	-				+0.5
3,314,624	-	yiiM	JDDGAC_17485	0.15	-0.0
3,314,656	-	yiiM	JDDGAC_17485	0.20	+0.2
3,314,760	-	yiiM	JDDGAC_17485	0.35	+0.3
3,314,760	-	yiiM	JDDGAC_17485	0.35	-0.0
3,314,760	-	yiiM	JDDGAC_17485	0.35	-0.1
3,314,760	-	yiiM	JDDGAC_17485	0.35	+0.4
3,314,760	-	yiiM	JDDGAC_17485	0.35	+1.0
3,314,760	-	yiiM	JDDGAC_17485	0.35	+0.8
3,314,822	+	yiiM	JDDGAC_17485	0.45	+0.3
3,314,822	+	yiiM	JDDGAC_17485	0.45	+0.0
3,314,834	+	yiiM	JDDGAC_17485	0.46	+0.1
3,314,835	-	yiiM	JDDGAC_17485	0.47	+0.2
3,314,867	-	yiiM	JDDGAC_17485	0.51	-0.8
3,314,867	-	yiiM	JDDGAC_17485	0.51	+0.4
3,314,898	+	yiiM	JDDGAC_17485	0.56	+0.0
3,314,900	+	yiiM	JDDGAC_17485	0.56	+0.3
3,314,900	+	yiiM	JDDGAC_17485	0.56	+0.3
3,314,907	+	yiiM	JDDGAC_17485	0.57	+0.1
3,315,002	+	yiiM	JDDGAC_17485	0.71	+1.0
3,315,002	+	yiiM	JDDGAC_17485	0.71	+1.1
3,315,002	+	yiiM	JDDGAC_17485	0.71	+0.5
3,315,003	-	yiiM	JDDGAC_17485	0.71	-1.0
3,315,003	-	yiiM	JDDGAC_17485	0.71	-0.1
3,315,173	+				-0.3
3,315,173	+				+1.5
3,315,174	-				-0.4
3,315,174	-				-0.4
3,315,174	-				-0.6
3,315,175	+				+0.1
3,315,175	+				+0.0
3,315,175	+				-0.2
3,315,175	+				+0.3
3,315,175	+				+0.1
3,315,175	+				-0.4
3,315,175	+				-0.8
3,315,175	+				+0.7
3,315,176	-				+0.9
3,315,176	-				-0.2
3,315,176	-				+0.2
3,315,237	+				-0.4
3,315,237	+				+0.3
3,315,237	+				-0.4
3,315,237	+				+0.6
3,315,238	-				+0.2
3,315,238	-				-0.3
3,315,238	-				+1.3
3,315,242	+				+0.5
3,315,267	+				-0.0
3,315,272	-				+0.1
3,315,272	-				-0.4
3,315,309	+				-0.7
3,315,309	+				+0.1
3,315,310	-				-0.3
3,315,331	+				-0.3
3,315,356	-				-1.6
3,315,360	-				+0.1
3,315,360	-				+0.6
3,315,360	-				-0.4
3,315,395	-				+0.6
3,315,406	+				-0.4
3,315,412	+				+0.1
3,315,413	-				-0.9