Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10375

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalT and galT are separated by 9 nucleotidesgalT and galK are separated by 3 nucleotides JDDGAC_10370: galT - galactose-1-phosphate uridylyltransferase, at 1,849,387 to 1,850,403 galT JDDGAC_10375: galT - galactose-1-phosphate uridylyltransferase, at 1,850,413 to 1,851,459 galT JDDGAC_10380: galK - galactokinase, at 1,851,463 to 1,852,611 galK Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -2 -1 0 1at 1849.494 kb on + strand, within galTat 1849.505 kb on + strand, within galTat 1849.676 kb on - strand, within galTat 1849.728 kb on + strand, within galTat 1849.769 kb on - strand, within galTat 1849.792 kb on + strand, within galTat 1849.987 kb on - strand, within galTat 1849.987 kb on - strand, within galTat 1849.987 kb on - strand, within galTat 1850.083 kb on + strand, within galTat 1850.084 kb on - strand, within galTat 1850.093 kb on + strand, within galTat 1850.153 kb on + strand, within galTat 1850.161 kb on + strand, within galTat 1850.162 kb on - strand, within galTat 1850.162 kb on - strand, within galTat 1850.162 kb on - strand, within galTat 1850.181 kb on - strand, within galTat 1850.243 kb on - strand, within galTat 1850.243 kb on - strand, within galTat 1850.584 kb on - strand, within galTat 1850.630 kb on - strand, within galTat 1851.013 kb on + strand, within galTat 1851.114 kb on - strand, within galTat 1851.208 kb on + strand, within galTat 1851.208 kb on + strand, within galTat 1851.238 kb on + strand, within galTat 1851.457 kb on + strandat 1851.575 kb on - strandat 1851.966 kb on + strand, within galKat 1852.129 kb on + strand, within galKat 1852.263 kb on + strand, within galKat 1852.362 kb on + strand, within galKat 1852.448 kb on + strand, within galKat 1852.448 kb on + strand, within galKat 1852.449 kb on - strand, within galK

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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1,849,494 + galT JDDGAC_10370 0.11 -1.1
1,849,505 + galT JDDGAC_10370 0.12 +1.1
1,849,676 - galT JDDGAC_10370 0.28 -0.9
1,849,728 + galT JDDGAC_10370 0.34 +0.3
1,849,769 - galT JDDGAC_10370 0.38 +0.1
1,849,792 + galT JDDGAC_10370 0.40 -0.5
1,849,987 - galT JDDGAC_10370 0.59 -0.0
1,849,987 - galT JDDGAC_10370 0.59 -0.3
1,849,987 - galT JDDGAC_10370 0.59 -1.5
1,850,083 + galT JDDGAC_10370 0.68 -0.2
1,850,084 - galT JDDGAC_10370 0.69 +0.4
1,850,093 + galT JDDGAC_10370 0.69 -0.3
1,850,153 + galT JDDGAC_10370 0.75 -0.5
1,850,161 + galT JDDGAC_10370 0.76 -0.1
1,850,162 - galT JDDGAC_10370 0.76 -0.0
1,850,162 - galT JDDGAC_10370 0.76 +0.5
1,850,162 - galT JDDGAC_10370 0.76 +0.6
1,850,181 - galT JDDGAC_10370 0.78 -0.9
1,850,243 - galT JDDGAC_10370 0.84 +0.5
1,850,243 - galT JDDGAC_10370 0.84 -1.1
1,850,584 - galT JDDGAC_10375 0.16 +0.9
1,850,630 - galT JDDGAC_10375 0.21 +0.3
1,851,013 + galT JDDGAC_10375 0.57 +0.5
1,851,114 - galT JDDGAC_10375 0.67 -2.2
1,851,208 + galT JDDGAC_10375 0.76 +0.3
1,851,208 + galT JDDGAC_10375 0.76 +1.0
1,851,238 + galT JDDGAC_10375 0.79 -0.8
1,851,457 + -0.2
1,851,575 - +0.1
1,851,966 + galK JDDGAC_10380 0.44 -0.6
1,852,129 + galK JDDGAC_10380 0.58 +0.0
1,852,263 + galK JDDGAC_10380 0.70 -0.2
1,852,362 + galK JDDGAC_10380 0.78 -0.5
1,852,448 + galK JDDGAC_10380 0.86 -0.2
1,852,448 + galK JDDGAC_10380 0.86 -1.1
1,852,449 - galK JDDGAC_10380 0.86 -0.4

Or see this region's nucleotide sequence