Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06065

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntychO and ychN are separated by 149 nucleotidesychN and chaC are separated by 43 nucleotideschaC and chaB are separated by 136 nucleotides JDDGAC_06060: ychO - inverse autotransporter invasin YchO, at 1,057,024 to 1,058,454 ychO JDDGAC_06065: ychN - DsrE/F sulfur relay family protein YchN, at 1,058,604 to 1,058,957 ychN JDDGAC_06070: chaC - glutathione-specific gamma-glutamylcyclotransferase, at 1,059,001 to 1,059,720 chaC JDDGAC_06075: chaB - putative cation transport regulator ChaB, at 1,059,857 to 1,060,087 chaB Position (kb) 1058 1059Strain fitness (log2 ratio) -3 -2 -1 0 1at 1057.701 kb on - strand, within ychOat 1057.884 kb on - strand, within ychOat 1057.894 kb on - strand, within ychOat 1057.895 kb on + strand, within ychOat 1057.972 kb on - strand, within ychOat 1058.305 kb on - strand, within ychOat 1058.661 kb on - strand, within ychNat 1058.785 kb on + strand, within ychNat 1058.785 kb on + strand, within ychNat 1058.785 kb on + strand, within ychNat 1058.999 kb on - strandat 1059.109 kb on - strand, within chaCat 1059.794 kb on - strandat 1059.840 kb on + strandat 1059.841 kb on - strandat 1059.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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1,057,701 - ychO JDDGAC_06060 0.47 -2.1
1,057,884 - ychO JDDGAC_06060 0.60 -0.3
1,057,894 - ychO JDDGAC_06060 0.61 +0.0
1,057,895 + ychO JDDGAC_06060 0.61 +0.2
1,057,972 - ychO JDDGAC_06060 0.66 +0.1
1,058,305 - ychO JDDGAC_06060 0.90 +0.2
1,058,661 - ychN JDDGAC_06065 0.16 -2.5
1,058,785 + ychN JDDGAC_06065 0.51 -3.0
1,058,785 + ychN JDDGAC_06065 0.51 -0.5
1,058,785 + ychN JDDGAC_06065 0.51 -0.1
1,058,999 - -0.0
1,059,109 - chaC JDDGAC_06070 0.15 +0.6
1,059,794 - -0.1
1,059,840 + -1.3
1,059,841 - -3.1
1,059,877 + +0.4

Or see this region's nucleotide sequence