Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05580 and JDDGAC_05585 overlap by 11 nucleotides JDDGAC_05585 and gp16 overlap by 4 nucleotides gp16 and mor are separated by 69 nucleotides mor and rrrD are separated by 71 nucleotides rrrD and JDDGAC_05605 overlap by 38 nucleotides
JDDGAC_05580: JDDGAC_05580 - hypothetical protein, at 976,527 to 976,724
_05580
JDDGAC_05585: JDDGAC_05585 - hypothetical protein, at 976,714 to 977,010
_05585
JDDGAC_05590: gp16 - Bacteriophage Mu, GemA protein, at 977,007 to 977,516
gp16
JDDGAC_05595: mor - transcriptional regulator, at 977,586 to 978,011
mor
JDDGAC_05600: rrrD - endolysin, at 978,083 to 978,583
rrrD
JDDGAC_05605: JDDGAC_05605 - hypothetical protein, at 978,546 to 979,046
_05605
Position (kb) 977
978
979 Strain fitness (log2 ratio) -2
-1
0
1 at 976.609 kb on + strand, within JDDGAC_05580 at 976.627 kb on - strand, within JDDGAC_05580 at 976.874 kb on + strand, within JDDGAC_05585 at 976.878 kb on + strand, within JDDGAC_05585 at 977.001 kb on + strand at 977.001 kb on + strand at 977.001 kb on + strand at 977.073 kb on + strand, within gp16 at 977.073 kb on + strand, within gp16 at 977.073 kb on + strand, within gp16 at 977.073 kb on + strand, within gp16 at 977.074 kb on - strand, within gp16 at 977.075 kb on + strand, within gp16 at 977.271 kb on - strand, within gp16 at 977.552 kb on - strand at 977.823 kb on + strand, within mor at 977.827 kb on - strand, within mor at 977.827 kb on - strand, within mor at 977.827 kb on - strand, within mor at 977.951 kb on + strand, within mor at 978.078 kb on + strand at 978.079 kb on - strand at 978.079 kb on - strand at 978.079 kb on - strand at 978.110 kb on - strand at 978.203 kb on + strand, within rrrD at 978.203 kb on + strand, within rrrD at 978.236 kb on + strand, within rrrD at 978.482 kb on + strand, within rrrD at 978.483 kb on - strand, within rrrD at 978.483 kb on - strand, within rrrD at 978.483 kb on - strand, within rrrD at 978.485 kb on - strand, within rrrD at 978.555 kb on + strand at 978.734 kb on + strand, within JDDGAC_05605 at 978.734 kb on + strand, within JDDGAC_05605 at 978.735 kb on - strand, within JDDGAC_05605 at 978.776 kb on + strand, within JDDGAC_05605
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 976,609 + JDDGAC_05580 0.41 -0.9 976,627 - JDDGAC_05580 0.51 +0.4 976,874 + JDDGAC_05585 0.54 +1.2 976,878 + JDDGAC_05585 0.55 +0.3 977,001 + +1.3 977,001 + -0.6 977,001 + -0.9 977,073 + gp16 JDDGAC_05590 0.13 +0.9 977,073 + gp16 JDDGAC_05590 0.13 -0.7 977,073 + gp16 JDDGAC_05590 0.13 +0.2 977,073 + gp16 JDDGAC_05590 0.13 -0.2 977,074 - gp16 JDDGAC_05590 0.13 -0.2 977,075 + gp16 JDDGAC_05590 0.13 -2.4 977,271 - gp16 JDDGAC_05590 0.52 +1.3 977,552 - +0.6 977,823 + mor JDDGAC_05595 0.56 -0.6 977,827 - mor JDDGAC_05595 0.57 -1.8 977,827 - mor JDDGAC_05595 0.57 +0.5 977,827 - mor JDDGAC_05595 0.57 +0.6 977,951 + mor JDDGAC_05595 0.86 -0.4 978,078 + +1.6 978,079 - -0.6 978,079 - +0.3 978,079 - +0.2 978,110 - +0.7 978,203 + rrrD JDDGAC_05600 0.24 -1.2 978,203 + rrrD JDDGAC_05600 0.24 +0.3 978,236 + rrrD JDDGAC_05600 0.31 -0.8 978,482 + rrrD JDDGAC_05600 0.80 +1.0 978,483 - rrrD JDDGAC_05600 0.80 +1.0 978,483 - rrrD JDDGAC_05600 0.80 -1.7 978,483 - rrrD JDDGAC_05600 0.80 -1.7 978,485 - rrrD JDDGAC_05600 0.80 +0.6 978,555 + +0.4 978,734 + JDDGAC_05605 0.38 -1.9 978,734 + JDDGAC_05605 0.38 -0.6 978,735 - JDDGAC_05605 0.38 -0.2 978,776 + JDDGAC_05605 0.46 -1.7
Or see this region's nucleotide sequence