Strain Fitness in Escherichia coli ECRC98 around JDDGAC_05245

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespM1 and nleG are separated by 183 nucleotides JDDGAC_05245: espM1 - T3SS effector guanine nucleotide exchange factor EspM1, at 925,641 to 926,231 espM1 JDDGAC_05250: nleG - T3SS effector E3 ubiquitin-protein ligase NleG, at 926,415 to 927,062 nleG Position (kb) 925 926 927Strain fitness (log2 ratio) -1 0 1at 924.653 kb on + strandat 924.659 kb on + strandat 925.089 kb on - strandat 925.089 kb on - strandat 925.128 kb on - strandat 925.128 kb on - strandat 925.128 kb on - strandat 925.378 kb on - strandat 925.515 kb on - strandat 925.552 kb on + strandat 925.553 kb on - strandat 925.557 kb on - strandat 925.557 kb on - strandat 925.557 kb on - strandat 925.559 kb on - strandat 925.559 kb on - strandat 925.687 kb on - strandat 925.698 kb on - strandat 925.903 kb on - strand, within espM1at 926.002 kb on - strand, within espM1at 926.232 kb on - strandat 926.271 kb on - strandat 926.345 kb on - strandat 926.355 kb on + strandat 926.395 kb on - strandat 926.694 kb on - strand, within nleGat 926.694 kb on - strand, within nleG

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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924,653 + +0.3
924,659 + +1.4
925,089 - +0.5
925,089 - +1.1
925,128 - -0.5
925,128 - -1.0
925,128 - +0.2
925,378 - +0.0
925,515 - +0.4
925,552 + +0.3
925,553 - +0.3
925,557 - +0.4
925,557 - -0.2
925,557 - +0.0
925,559 - +0.4
925,559 - +0.5
925,687 - +0.2
925,698 - +0.4
925,903 - espM1 JDDGAC_05245 0.44 -1.3
926,002 - espM1 JDDGAC_05245 0.61 +0.0
926,232 - -0.2
926,271 - +0.9
926,345 - +0.0
926,355 + +0.6
926,395 - +0.9
926,694 - nleG JDDGAC_05250 0.43 -0.7
926,694 - nleG JDDGAC_05250 0.43 +0.0

Or see this region's nucleotide sequence