Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04965

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpspF and puuE are separated by 130 nucleotidespuuE and puuB are separated by 37 nucleotides JDDGAC_04960: pspF - phage shock protein operon transcriptional activator, at 862,184 to 863,161 pspF JDDGAC_04965: puuE - 4-aminobutyrate transaminase, at 863,292 to 864,557 puuE JDDGAC_04970: puuB - gamma-glutamylputrescine oxidase, at 864,595 to 865,875 puuB Position (kb) 863 864 865Strain fitness (log2 ratio) -2 -1 0 1 2at 862.386 kb on + strand, within pspFat 862.701 kb on + strand, within pspFat 862.741 kb on + strand, within pspFat 862.741 kb on + strand, within pspFat 862.741 kb on + strand, within pspFat 862.742 kb on - strand, within pspFat 862.858 kb on + strand, within pspFat 863.081 kb on + strandat 863.081 kb on + strandat 863.082 kb on - strandat 863.120 kb on + strandat 863.121 kb on - strandat 863.175 kb on + strandat 863.218 kb on + strandat 863.225 kb on + strandat 863.246 kb on - strandat 863.291 kb on - strandat 863.518 kb on - strand, within puuEat 863.669 kb on - strand, within puuEat 863.772 kb on + strand, within puuEat 863.772 kb on + strand, within puuEat 863.773 kb on - strand, within puuEat 863.792 kb on - strand, within puuEat 864.133 kb on + strand, within puuEat 864.133 kb on + strand, within puuEat 864.133 kb on + strand, within puuEat 864.133 kb on + strand, within puuEat 864.134 kb on - strand, within puuEat 864.137 kb on + strand, within puuEat 864.138 kb on - strand, within puuEat 864.138 kb on - strand, within puuEat 864.304 kb on + strand, within puuEat 864.313 kb on + strand, within puuEat 864.433 kb on + strandat 864.965 kb on + strand, within puuBat 864.966 kb on - strand, within puuBat 865.033 kb on - strand, within puuBat 865.190 kb on + strand, within puuBat 865.191 kb on - strand, within puuBat 865.219 kb on - strand, within puuBat 865.335 kb on + strand, within puuBat 865.335 kb on + strand, within puuBat 865.336 kb on - strand, within puuBat 865.336 kb on - strand, within puuBat 865.483 kb on - strand, within puuBat 865.545 kb on + strand, within puuBat 865.546 kb on - strand, within puuB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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862,386 + pspF JDDGAC_04960 0.21 +0.2
862,701 + pspF JDDGAC_04960 0.53 -0.6
862,741 + pspF JDDGAC_04960 0.57 -0.2
862,741 + pspF JDDGAC_04960 0.57 +0.6
862,741 + pspF JDDGAC_04960 0.57 +0.7
862,742 - pspF JDDGAC_04960 0.57 -0.2
862,858 + pspF JDDGAC_04960 0.69 +1.2
863,081 + +0.6
863,081 + -0.4
863,082 - +0.3
863,120 + +0.3
863,121 - +0.2
863,175 + +2.0
863,218 + -0.1
863,225 + +0.3
863,246 - -0.5
863,291 - -1.0
863,518 - puuE JDDGAC_04965 0.18 -1.0
863,669 - puuE JDDGAC_04965 0.30 +0.1
863,772 + puuE JDDGAC_04965 0.38 -0.1
863,772 + puuE JDDGAC_04965 0.38 +0.2
863,773 - puuE JDDGAC_04965 0.38 +0.6
863,792 - puuE JDDGAC_04965 0.39 -1.9
864,133 + puuE JDDGAC_04965 0.66 -0.8
864,133 + puuE JDDGAC_04965 0.66 +1.0
864,133 + puuE JDDGAC_04965 0.66 +1.4
864,133 + puuE JDDGAC_04965 0.66 -0.5
864,134 - puuE JDDGAC_04965 0.67 +0.6
864,137 + puuE JDDGAC_04965 0.67 +0.1
864,138 - puuE JDDGAC_04965 0.67 -0.4
864,138 - puuE JDDGAC_04965 0.67 +0.1
864,304 + puuE JDDGAC_04965 0.80 -0.0
864,313 + puuE JDDGAC_04965 0.81 -0.6
864,433 + +0.6
864,965 + puuB JDDGAC_04970 0.29 +0.8
864,966 - puuB JDDGAC_04970 0.29 -0.1
865,033 - puuB JDDGAC_04970 0.34 -0.0
865,190 + puuB JDDGAC_04970 0.46 +0.3
865,191 - puuB JDDGAC_04970 0.47 -0.8
865,219 - puuB JDDGAC_04970 0.49 +0.1
865,335 + puuB JDDGAC_04970 0.58 -0.3
865,335 + puuB JDDGAC_04970 0.58 +2.6
865,336 - puuB JDDGAC_04970 0.58 -0.6
865,336 - puuB JDDGAC_04970 0.58 -0.2
865,483 - puuB JDDGAC_04970 0.69 +0.2
865,545 + puuB JDDGAC_04970 0.74 -0.1
865,546 - puuB JDDGAC_04970 0.74 +0.0

Or see this region's nucleotide sequence