Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04490

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_04480 and JDDGAC_04485 are separated by 4 nucleotidesJDDGAC_04485 and JDDGAC_04490 are separated by 447 nucleotidesJDDGAC_04490 and JDDGAC_04505 are separated by 240 nucleotidesJDDGAC_04505 and terB overlap by 188 nucleotides JDDGAC_04480: JDDGAC_04480 - DUF1327 domain-containing protein, at 794,330 to 794,674 _04480 JDDGAC_04485: JDDGAC_04485 - Holin, at 794,679 to 794,885 _04485 JDDGAC_04490: JDDGAC_04490 - DUF1737 domain-containing protein, at 795,333 to 797,183 _04490 JDDGAC_04505: JDDGAC_04505 - hypothetical protein, at 797,424 to 797,942 _04505 JDDGAC_04510: terB - tellurite resistance protein, at 797,755 to 798,186 terB Position (kb) 795 796 797 798Strain fitness (log2 ratio) -1 0 1at 794.726 kb on - strand, within JDDGAC_04485at 796.878 kb on - strand, within JDDGAC_04490at 797.940 kb on + strandat 798.021 kb on + strand, within terBat 798.078 kb on - strand, within terB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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794,726 - JDDGAC_04485 0.23 +0.7
796,878 - JDDGAC_04490 0.83 -0.0
797,940 + +1.3
798,021 + terB JDDGAC_04510 0.62 -0.7
798,078 - terB JDDGAC_04510 0.75 -0.6

Or see this region's nucleotide sequence