Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlhA and sutR are separated by 30 nucleotides sutR and ydcO are separated by 91 nucleotides ydcO and ydcL are separated by 34 nucleotides
JDDGAC_04090: rlhA - 23S rRNA 5-hydroxycytidine C2501 synthase, at 714,725 to 716,728
rlhA
JDDGAC_04095: sutR - DNA-binding transcriptional regulator SutR, at 716,759 to 717,295
sutR
JDDGAC_04100: ydcO - BenE family transporter YdcO, at 717,387 to 718,559
ydcO
JDDGAC_04105: ydcL - Uncharacterized lipoprotein YdcL, at 718,594 to 719,262
ydcL
Position (kb) 717
718
719 Strain fitness (log2 ratio) -2
-1
0
1
2 at 716.422 kb on - strand, within rlhA at 716.593 kb on - strand at 716.618 kb on - strand at 716.655 kb on - strand at 716.699 kb on + strand at 716.700 kb on - strand at 716.747 kb on + strand at 716.821 kb on - strand, within sutR at 716.821 kb on - strand, within sutR at 716.821 kb on - strand, within sutR at 716.821 kb on - strand, within sutR at 716.824 kb on + strand, within sutR at 717.252 kb on - strand at 717.252 kb on - strand at 717.252 kb on - strand at 717.260 kb on - strand at 717.368 kb on + strand at 717.442 kb on + strand at 717.574 kb on + strand, within ydcO at 717.574 kb on + strand, within ydcO at 717.650 kb on - strand, within ydcO at 717.677 kb on + strand, within ydcO at 717.698 kb on - strand, within ydcO at 717.744 kb on - strand, within ydcO at 717.830 kb on + strand, within ydcO at 717.889 kb on - strand, within ydcO at 717.990 kb on - strand, within ydcO at 718.337 kb on - strand, within ydcO at 718.376 kb on + strand, within ydcO at 718.501 kb on + strand at 718.501 kb on + strand at 718.678 kb on - strand, within ydcL at 718.698 kb on + strand, within ydcL at 718.699 kb on - strand, within ydcL at 718.699 kb on - strand, within ydcL at 718.769 kb on + strand, within ydcL at 718.938 kb on + strand, within ydcL at 719.040 kb on - strand, within ydcL at 719.069 kb on + strand, within ydcL at 719.171 kb on + strand, within ydcL at 719.266 kb on + strand at 719.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 716,422 - rlhA JDDGAC_04090 0.85 +1.0 716,593 - +1.3 716,618 - +1.0 716,655 - +0.4 716,699 + -0.1 716,700 - +0.1 716,747 + -0.8 716,821 - sutR JDDGAC_04095 0.12 -0.2 716,821 - sutR JDDGAC_04095 0.12 +0.3 716,821 - sutR JDDGAC_04095 0.12 -2.2 716,821 - sutR JDDGAC_04095 0.12 -1.3 716,824 + sutR JDDGAC_04095 0.12 +0.7 717,252 - +0.1 717,252 - +1.2 717,252 - -0.8 717,260 - +0.7 717,368 + -0.5 717,442 + +0.9 717,574 + ydcO JDDGAC_04100 0.16 +0.0 717,574 + ydcO JDDGAC_04100 0.16 -0.8 717,650 - ydcO JDDGAC_04100 0.22 -0.9 717,677 + ydcO JDDGAC_04100 0.25 +0.5 717,698 - ydcO JDDGAC_04100 0.27 +0.4 717,744 - ydcO JDDGAC_04100 0.30 -0.2 717,830 + ydcO JDDGAC_04100 0.38 +0.7 717,889 - ydcO JDDGAC_04100 0.43 -1.0 717,990 - ydcO JDDGAC_04100 0.51 -0.9 718,337 - ydcO JDDGAC_04100 0.81 +0.2 718,376 + ydcO JDDGAC_04100 0.84 +1.9 718,501 + +0.3 718,501 + +0.6 718,678 - ydcL JDDGAC_04105 0.13 +1.5 718,698 + ydcL JDDGAC_04105 0.16 +0.7 718,699 - ydcL JDDGAC_04105 0.16 -0.2 718,699 - ydcL JDDGAC_04105 0.16 +0.9 718,769 + ydcL JDDGAC_04105 0.26 +0.6 718,938 + ydcL JDDGAC_04105 0.51 -0.0 719,040 - ydcL JDDGAC_04105 0.67 +0.1 719,069 + ydcL JDDGAC_04105 0.71 -0.6 719,171 + ydcL JDDGAC_04105 0.86 +0.6 719,266 + -0.4 719,382 - +0.1
Or see this region's nucleotide sequence