Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03730

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeS and ydeR are separated by 12 nucleotidesydeR and ydeQ are separated by 59 nucleotidesydeQ and ydeP are separated by 333 nucleotides JDDGAC_03720: ydeS - Uncharacterized fimbrial-like protein YdeS, at 629,110 to 629,640 ydeS JDDGAC_03725: ydeR - Uncharacterized fimbrial-like protein YdeR, at 629,653 to 630,156 ydeR JDDGAC_03730: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 630,216 to 631,130 ydeQ JDDGAC_03735: ydeP - acid resistance putative oxidoreductase YdeP, at 631,464 to 633,743 ydeP Position (kb) 630 631 632Strain fitness (log2 ratio) -2 -1 0 1at 629.401 kb on - strand, within ydeSat 629.685 kb on + strandat 629.733 kb on + strand, within ydeRat 629.863 kb on - strand, within ydeRat 629.978 kb on + strand, within ydeRat 630.072 kb on + strand, within ydeRat 630.073 kb on - strand, within ydeRat 630.213 kb on - strandat 630.498 kb on - strand, within ydeQat 630.841 kb on + strand, within ydeQat 631.146 kb on + strandat 631.553 kb on + strandat 631.747 kb on + strand, within ydePat 631.751 kb on + strand, within ydePat 631.886 kb on + strand, within ydePat 631.982 kb on + strand, within ydeP

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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629,401 - ydeS JDDGAC_03720 0.55 +1.2
629,685 + +0.4
629,733 + ydeR JDDGAC_03725 0.16 -0.5
629,863 - ydeR JDDGAC_03725 0.42 +1.2
629,978 + ydeR JDDGAC_03725 0.64 -0.1
630,072 + ydeR JDDGAC_03725 0.83 -0.7
630,073 - ydeR JDDGAC_03725 0.83 -1.8
630,213 - -0.6
630,498 - ydeQ JDDGAC_03730 0.31 -2.7
630,841 + ydeQ JDDGAC_03730 0.68 -0.5
631,146 + +0.2
631,553 + -0.4
631,747 + ydeP JDDGAC_03735 0.12 +0.1
631,751 + ydeP JDDGAC_03735 0.13 -0.4
631,886 + ydeP JDDGAC_03735 0.19 -2.2
631,982 + ydeP JDDGAC_03735 0.23 -0.2

Or see this region's nucleotide sequence