Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03335

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntterB and JDDGAC_03325 overlap by 4 nucleotidesJDDGAC_03325 and JDDGAC_03335 are separated by 313 nucleotidesJDDGAC_03335 and JDDGAC_03340 are separated by 447 nucleotidesJDDGAC_03340 and JDDGAC_03345 are separated by 4 nucleotides JDDGAC_03320: terB - tellurite resistance protein, at 551,721 to 552,152 terB JDDGAC_03325: JDDGAC_03325 - DUF3927 domain-containing protein, at 552,149 to 552,316 _03325 JDDGAC_03335: JDDGAC_03335 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 552,630 to 554,480 _03335 JDDGAC_03340: JDDGAC_03340 - lysis protein, at 554,928 to 555,134 _03340 JDDGAC_03345: JDDGAC_03345 - YdfR family protein, at 555,139 to 555,483 _03345 Position (kb) 552 553 554 555Strain fitness (log2 ratio) -1 0 1at 551.807 kb on + strand, within terBat 551.818 kb on - strand, within terBat 553.926 kb on - strand, within JDDGAC_03335at 553.926 kb on - strand, within JDDGAC_03335at 554.754 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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551,807 + terB JDDGAC_03320 0.20 +0.2
551,818 - terB JDDGAC_03320 0.22 -0.3
553,926 - JDDGAC_03335 0.70 -1.2
553,926 - JDDGAC_03335 0.70 +0.9
554,754 + -1.6

Or see this region's nucleotide sequence