Strain Fitness in Erwinia amylovora T8 around OLJFJH_11090

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11080 and OLJFJH_11085 are separated by 89 nucleotidesOLJFJH_11085 and OLJFJH_11090 overlap by 4 nucleotidesOLJFJH_11090 and OLJFJH_11095 overlap by 4 nucleotidesOLJFJH_11095 and OLJFJH_11100 overlap by 4 nucleotides OLJFJH_11080: OLJFJH_11080 - heme exporter protein CcmB, at 2,306,705 to 2,307,364 _11080 OLJFJH_11085: OLJFJH_11085 - heme ABC transporter permease, at 2,307,454 to 2,308,197 _11085 OLJFJH_11090: OLJFJH_11090 - heme exporter protein CcmD, at 2,308,194 to 2,308,427 _11090 OLJFJH_11095: OLJFJH_11095 - cytochrome c maturation protein CcmE, at 2,308,424 to 2,308,906 _11095 OLJFJH_11100: OLJFJH_11100 - heme lyase NrfEFG subunit NrfE, at 2,308,903 to 2,310,858 _11100 Position (kb) 2308 2309Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2307.283 kb on + strand, within OLJFJH_11080at 2307.284 kb on - strand, within OLJFJH_11080at 2307.295 kb on + strand, within OLJFJH_11080at 2307.296 kb on - strand, within OLJFJH_11080at 2307.296 kb on - strand, within OLJFJH_11080at 2307.296 kb on - strand, within OLJFJH_11080at 2307.296 kb on - strand, within OLJFJH_11080at 2307.296 kb on - strand, within OLJFJH_11080at 2307.296 kb on - strand, within OLJFJH_11080at 2307.297 kb on + strand, within OLJFJH_11080at 2307.363 kb on - strandat 2307.414 kb on + strandat 2307.415 kb on - strandat 2307.447 kb on + strandat 2307.622 kb on - strand, within OLJFJH_11085at 2307.622 kb on - strand, within OLJFJH_11085at 2307.625 kb on + strand, within OLJFJH_11085at 2307.625 kb on + strand, within OLJFJH_11085at 2307.625 kb on + strand, within OLJFJH_11085at 2307.625 kb on + strand, within OLJFJH_11085at 2307.625 kb on + strand, within OLJFJH_11085at 2307.625 kb on + strand, within OLJFJH_11085at 2307.625 kb on + strand, within OLJFJH_11085at 2307.626 kb on - strand, within OLJFJH_11085at 2307.626 kb on - strand, within OLJFJH_11085at 2307.626 kb on - strand, within OLJFJH_11085at 2307.646 kb on - strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.664 kb on + strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.665 kb on - strand, within OLJFJH_11085at 2307.668 kb on + strand, within OLJFJH_11085at 2307.669 kb on - strand, within OLJFJH_11085at 2307.669 kb on - strand, within OLJFJH_11085at 2308.025 kb on + strand, within OLJFJH_11085at 2308.072 kb on - strand, within OLJFJH_11085at 2308.072 kb on - strand, within OLJFJH_11085at 2308.096 kb on - strand, within OLJFJH_11085at 2308.194 kb on - strandat 2308.251 kb on + strand, within OLJFJH_11090at 2308.252 kb on - strand, within OLJFJH_11090at 2308.438 kb on + strandat 2308.439 kb on - strandat 2308.505 kb on + strand, within OLJFJH_11095at 2308.505 kb on + strand, within OLJFJH_11095at 2308.505 kb on + strand, within OLJFJH_11095at 2308.505 kb on + strand, within OLJFJH_11095at 2308.505 kb on + strand, within OLJFJH_11095at 2308.506 kb on - strand, within OLJFJH_11095at 2308.536 kb on - strand, within OLJFJH_11095at 2308.538 kb on - strand, within OLJFJH_11095at 2308.706 kb on + strand, within OLJFJH_11095at 2309.075 kb on + strandat 2309.076 kb on - strandat 2309.110 kb on + strand, within OLJFJH_11100at 2309.110 kb on + strand, within OLJFJH_11100at 2309.320 kb on - strand, within OLJFJH_11100

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5
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2,307,283 + OLJFJH_11080 0.88 -2.5
2,307,284 - OLJFJH_11080 0.88 -1.5
2,307,295 + OLJFJH_11080 0.89 -2.6
2,307,296 - OLJFJH_11080 0.90 +0.9
2,307,296 - OLJFJH_11080 0.90 +0.2
2,307,296 - OLJFJH_11080 0.90 -0.0
2,307,296 - OLJFJH_11080 0.90 +0.2
2,307,296 - OLJFJH_11080 0.90 -0.6
2,307,296 - OLJFJH_11080 0.90 -0.1
2,307,297 + OLJFJH_11080 0.90 -0.5
2,307,363 - +0.2
2,307,414 + +0.0
2,307,415 - +0.8
2,307,447 + +0.3
2,307,622 - OLJFJH_11085 0.23 -0.5
2,307,622 - OLJFJH_11085 0.23 +2.9
2,307,625 + OLJFJH_11085 0.23 +1.0
2,307,625 + OLJFJH_11085 0.23 -0.6
2,307,625 + OLJFJH_11085 0.23 +5.4
2,307,625 + OLJFJH_11085 0.23 -0.7
2,307,625 + OLJFJH_11085 0.23 +0.3
2,307,625 + OLJFJH_11085 0.23 -1.2
2,307,625 + OLJFJH_11085 0.23 +0.1
2,307,626 - OLJFJH_11085 0.23 +0.4
2,307,626 - OLJFJH_11085 0.23 -0.2
2,307,626 - OLJFJH_11085 0.23 +2.2
2,307,646 - OLJFJH_11085 0.26 +1.4
2,307,664 + OLJFJH_11085 0.28 +0.3
2,307,664 + OLJFJH_11085 0.28 -0.8
2,307,664 + OLJFJH_11085 0.28 -0.2
2,307,664 + OLJFJH_11085 0.28 +0.5
2,307,664 + OLJFJH_11085 0.28 +2.3
2,307,664 + OLJFJH_11085 0.28 -0.6
2,307,664 + OLJFJH_11085 0.28 -1.1
2,307,664 + OLJFJH_11085 0.28 +1.2
2,307,664 + OLJFJH_11085 0.28 -1.6
2,307,664 + OLJFJH_11085 0.28 +0.1
2,307,664 + OLJFJH_11085 0.28 -1.0
2,307,664 + OLJFJH_11085 0.28 -0.3
2,307,664 + OLJFJH_11085 0.28 -0.8
2,307,664 + OLJFJH_11085 0.28 +0.1
2,307,665 - OLJFJH_11085 0.28 -0.8
2,307,665 - OLJFJH_11085 0.28 -0.2
2,307,665 - OLJFJH_11085 0.28 -0.2
2,307,665 - OLJFJH_11085 0.28 +1.2
2,307,665 - OLJFJH_11085 0.28 -0.6
2,307,665 - OLJFJH_11085 0.28 +5.5
2,307,665 - OLJFJH_11085 0.28 -0.4
2,307,665 - OLJFJH_11085 0.28 +0.2
2,307,665 - OLJFJH_11085 0.28 +0.2
2,307,665 - OLJFJH_11085 0.28 -0.9
2,307,668 + OLJFJH_11085 0.29 +0.5
2,307,669 - OLJFJH_11085 0.29 +0.3
2,307,669 - OLJFJH_11085 0.29 +0.2
2,308,025 + OLJFJH_11085 0.77 -1.1
2,308,072 - OLJFJH_11085 0.83 -0.7
2,308,072 - OLJFJH_11085 0.83 -0.2
2,308,096 - OLJFJH_11085 0.86 +0.1
2,308,194 - +0.8
2,308,251 + OLJFJH_11090 0.24 -1.1
2,308,252 - OLJFJH_11090 0.25 -1.1
2,308,438 + +0.3
2,308,439 - -0.8
2,308,505 + OLJFJH_11095 0.17 +0.3
2,308,505 + OLJFJH_11095 0.17 -0.4
2,308,505 + OLJFJH_11095 0.17 +0.8
2,308,505 + OLJFJH_11095 0.17 +0.1
2,308,505 + OLJFJH_11095 0.17 -1.4
2,308,506 - OLJFJH_11095 0.17 -0.6
2,308,536 - OLJFJH_11095 0.23 -0.8
2,308,538 - OLJFJH_11095 0.24 +0.2
2,308,706 + OLJFJH_11095 0.58 +0.1
2,309,075 + -0.3
2,309,076 - +0.5
2,309,110 + OLJFJH_11100 0.11 -0.2
2,309,110 + OLJFJH_11100 0.11 +0.1
2,309,320 - OLJFJH_11100 0.21 +0.9

Or see this region's nucleotide sequence