Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04100 and OLJFJH_04105 overlap by 38 nucleotides OLJFJH_04105 and OLJFJH_04110 overlap by 11 nucleotides OLJFJH_04110 and OLJFJH_04115 overlap by 8 nucleotides OLJFJH_04115 and OLJFJH_04120 overlap by 1 nucleotides OLJFJH_04120 and OLJFJH_04125 are separated by 115 nucleotides
OLJFJH_04100: OLJFJH_04100 - DNA uptake porin HofQ, at 779,322 to 780,566
_04100
OLJFJH_04105: OLJFJH_04105 - DUF2531 domain-containing protein, at 780,529 to 780,891
_04105
OLJFJH_04110: OLJFJH_04110 - hypothetical protein, at 780,881 to 781,381
_04110
OLJFJH_04115: OLJFJH_04115 - fimbrial assembly protein, at 781,374 to 781,922
_04115
OLJFJH_04120: OLJFJH_04120 - pilus assembly protein, at 781,922 to 782,749
_04120
OLJFJH_04125: OLJFJH_04125 - peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA, at 782,865 to 785,411
_04125
Position (kb) 781
782 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 780.411 kb on + strand, within OLJFJH_04100 at 780.411 kb on + strand, within OLJFJH_04100 at 780.434 kb on + strand, within OLJFJH_04100 at 780.435 kb on - strand, within OLJFJH_04100 at 780.534 kb on + strand at 780.534 kb on + strand at 780.534 kb on + strand at 780.567 kb on + strand, within OLJFJH_04105 at 780.568 kb on - strand, within OLJFJH_04105 at 780.568 kb on - strand, within OLJFJH_04105 at 780.568 kb on - strand, within OLJFJH_04105 at 780.568 kb on - strand, within OLJFJH_04105 at 780.568 kb on - strand, within OLJFJH_04105 at 780.635 kb on + strand, within OLJFJH_04105 at 780.734 kb on + strand, within OLJFJH_04105 at 781.137 kb on - strand, within OLJFJH_04110 at 781.375 kb on + strand at 781.375 kb on + strand at 781.376 kb on - strand at 781.419 kb on - strand at 781.515 kb on + strand, within OLJFJH_04115 at 781.526 kb on + strand, within OLJFJH_04115 at 781.568 kb on + strand, within OLJFJH_04115 at 781.580 kb on - strand, within OLJFJH_04115 at 781.603 kb on + strand, within OLJFJH_04115 at 781.630 kb on - strand, within OLJFJH_04115 at 781.833 kb on + strand, within OLJFJH_04115 at 781.999 kb on - strand at 782.071 kb on - strand, within OLJFJH_04120 at 782.271 kb on - strand, within OLJFJH_04120 at 782.355 kb on + strand, within OLJFJH_04120 at 782.393 kb on + strand, within OLJFJH_04120 at 782.394 kb on - strand, within OLJFJH_04120 at 782.414 kb on + strand, within OLJFJH_04120 at 782.415 kb on - strand, within OLJFJH_04120 at 782.449 kb on - strand, within OLJFJH_04120 at 782.449 kb on - strand, within OLJFJH_04120 at 782.573 kb on + strand, within OLJFJH_04120 at 782.573 kb on + strand, within OLJFJH_04120 at 782.574 kb on - strand, within OLJFJH_04120 at 782.576 kb on + strand, within OLJFJH_04120 at 782.576 kb on + strand, within OLJFJH_04120 at 782.577 kb on - strand, within OLJFJH_04120 at 782.623 kb on + strand, within OLJFJH_04120 at 782.623 kb on + strand, within OLJFJH_04120 at 782.624 kb on - strand, within OLJFJH_04120 at 782.624 kb on - strand, within OLJFJH_04120 at 782.624 kb on - strand, within OLJFJH_04120 at 782.775 kb on - strand at 782.784 kb on + strand at 782.784 kb on + strand at 782.784 kb on + strand at 782.785 kb on - strand at 782.785 kb on - strand at 782.794 kb on - strand at 782.807 kb on + strand at 782.807 kb on + strand at 782.808 kb on - strand at 782.809 kb on + strand at 782.809 kb on + strand at 782.809 kb on + strand at 782.810 kb on - strand at 782.810 kb on - strand at 782.810 kb on - strand at 782.810 kb on - strand at 782.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5 remove 780,411 + OLJFJH_04100 0.87 -0.8 780,411 + OLJFJH_04100 0.87 -0.1 780,434 + OLJFJH_04100 0.89 -0.7 780,435 - OLJFJH_04100 0.89 -0.8 780,534 + +1.1 780,534 + -2.1 780,534 + -0.6 780,567 + OLJFJH_04105 0.10 +0.9 780,568 - OLJFJH_04105 0.11 +0.1 780,568 - OLJFJH_04105 0.11 +1.6 780,568 - OLJFJH_04105 0.11 -0.3 780,568 - OLJFJH_04105 0.11 -0.4 780,568 - OLJFJH_04105 0.11 -1.1 780,635 + OLJFJH_04105 0.29 -0.1 780,734 + OLJFJH_04105 0.56 -0.1 781,137 - OLJFJH_04110 0.51 +0.9 781,375 + +3.7 781,375 + -1.2 781,376 - -1.6 781,419 - -0.7 781,515 + OLJFJH_04115 0.26 -0.6 781,526 + OLJFJH_04115 0.28 -0.8 781,568 + OLJFJH_04115 0.35 -1.4 781,580 - OLJFJH_04115 0.38 -1.8 781,603 + OLJFJH_04115 0.42 -0.2 781,630 - OLJFJH_04115 0.47 -0.7 781,833 + OLJFJH_04115 0.84 -1.0 781,999 - -0.7 782,071 - OLJFJH_04120 0.18 +0.1 782,271 - OLJFJH_04120 0.42 +0.6 782,355 + OLJFJH_04120 0.52 +0.2 782,393 + OLJFJH_04120 0.57 +1.3 782,394 - OLJFJH_04120 0.57 -0.1 782,414 + OLJFJH_04120 0.59 -0.6 782,415 - OLJFJH_04120 0.60 -0.9 782,449 - OLJFJH_04120 0.64 -0.3 782,449 - OLJFJH_04120 0.64 +0.2 782,573 + OLJFJH_04120 0.79 -0.8 782,573 + OLJFJH_04120 0.79 -0.0 782,574 - OLJFJH_04120 0.79 -1.2 782,576 + OLJFJH_04120 0.79 -0.8 782,576 + OLJFJH_04120 0.79 -2.1 782,577 - OLJFJH_04120 0.79 +0.1 782,623 + OLJFJH_04120 0.85 +1.4 782,623 + OLJFJH_04120 0.85 -0.9 782,624 - OLJFJH_04120 0.85 -0.3 782,624 - OLJFJH_04120 0.85 -0.7 782,624 - OLJFJH_04120 0.85 +0.6 782,775 - +6.3 782,784 + -0.5 782,784 + +0.1 782,784 + +0.2 782,785 - +0.4 782,785 - +0.3 782,794 - -0.1 782,807 + -0.9 782,807 + -0.3 782,808 - -0.4 782,809 + -0.5 782,809 + -1.2 782,809 + -1.3 782,810 - -0.2 782,810 - +1.9 782,810 - +8.0 782,810 - +1.3 782,830 - -0.7
Or see this region's nucleotide sequence