Strain Fitness in Erwinia amylovora T8 around OLJFJH_03965

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03955 and OLJFJH_03960 are separated by 0 nucleotidesOLJFJH_03960 and OLJFJH_03965 are separated by 126 nucleotidesOLJFJH_03965 and OLJFJH_03970 are separated by 359 nucleotides OLJFJH_03955: OLJFJH_03955 - glutathione-regulated potassium-efflux system protein KefB, at 749,945 to 751,750 _03955 OLJFJH_03960: OLJFJH_03960 - glutathione-regulated potassium-efflux system ancillary protein KefG, at 751,751 to 752,302 _03960 OLJFJH_03965: OLJFJH_03965 - ABC transporter ATP-binding protein, at 752,429 to 754,330 _03965 OLJFJH_03970: OLJFJH_03970 - amylovoran biosynthesis protein AmsF, at 754,690 to 756,438 _03970 Position (kb) 752 753 754 755Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 751.543 kb on + strand, within OLJFJH_03955at 751.544 kb on - strand, within OLJFJH_03955at 751.611 kb on - strandat 751.611 kb on - strandat 751.647 kb on + strandat 751.648 kb on - strandat 751.713 kb on + strandat 751.713 kb on + strandat 751.713 kb on + strandat 751.714 kb on - strandat 751.715 kb on + strandat 751.715 kb on + strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.794 kb on + strandat 751.846 kb on - strand, within OLJFJH_03960at 751.910 kb on - strand, within OLJFJH_03960at 751.910 kb on - strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.089 kb on + strand, within OLJFJH_03960at 752.090 kb on - strand, within OLJFJH_03960at 752.091 kb on + strand, within OLJFJH_03960at 752.091 kb on + strand, within OLJFJH_03960at 752.092 kb on - strand, within OLJFJH_03960at 752.181 kb on + strand, within OLJFJH_03960at 752.271 kb on + strandat 752.271 kb on + strandat 752.271 kb on + strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.429 kb on - strandat 752.437 kb on - strandat 752.437 kb on - strandat 752.569 kb on + strandat 752.570 kb on - strandat 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965at 752.940 kb on + strand, within OLJFJH_03965at 752.940 kb on + strand, within OLJFJH_03965at 753.011 kb on + strand, within OLJFJH_03965at 753.012 kb on - strand, within OLJFJH_03965at 753.079 kb on - strand, within OLJFJH_03965at 753.082 kb on + strand, within OLJFJH_03965at 753.082 kb on + strand, within OLJFJH_03965at 753.083 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.268 kb on + strand, within OLJFJH_03965at 753.322 kb on + strand, within OLJFJH_03965at 753.422 kb on - strand, within OLJFJH_03965at 753.478 kb on + strand, within OLJFJH_03965at 753.494 kb on - strand, within OLJFJH_03965at 753.494 kb on - strand, within OLJFJH_03965at 753.522 kb on + strand, within OLJFJH_03965at 753.963 kb on + strand, within OLJFJH_03965at 754.057 kb on + strand, within OLJFJH_03965at 754.057 kb on + strand, within OLJFJH_03965at 754.058 kb on - strand, within OLJFJH_03965at 754.200 kb on - strandat 754.213 kb on + strandat 754.214 kb on - strandat 754.214 kb on - strandat 754.335 kb on + strandat 754.380 kb on - strandat 754.380 kb on - strandat 754.643 kb on - strandat 754.666 kb on - strandat 754.697 kb on + strandat 754.701 kb on - strandat 754.710 kb on + strandat 754.710 kb on + strandat 754.710 kb on + strandat 754.711 kb on - strandat 754.711 kb on - strandat 754.729 kb on - strandat 754.761 kb on + strandat 754.761 kb on + strandat 754.761 kb on + strandat 754.819 kb on + strandat 754.819 kb on + strandat 754.819 kb on + strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.836 kb on + strandat 754.836 kb on + strandat 754.836 kb on + strandat 754.837 kb on - strandat 754.840 kb on + strandat 754.840 kb on + strandat 754.840 kb on + strandat 754.840 kb on + strandat 754.841 kb on - strandat 754.841 kb on - strandat 754.841 kb on - strandat 754.959 kb on + strand, within OLJFJH_03970at 755.152 kb on - strand, within OLJFJH_03970at 755.152 kb on - strand, within OLJFJH_03970at 755.176 kb on - strand, within OLJFJH_03970at 755.192 kb on - strand, within OLJFJH_03970at 755.295 kb on - strand, within OLJFJH_03970

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5
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751,543 + OLJFJH_03955 0.88 +0.3
751,544 - OLJFJH_03955 0.89 -0.6
751,611 - +0.4
751,611 - +0.9
751,647 + +0.1
751,648 - -2.4
751,713 + +0.7
751,713 + -0.7
751,713 + +0.1
751,714 - +0.3
751,715 + -0.1
751,715 + +1.2
751,716 - -0.9
751,716 - +0.6
751,716 - -0.1
751,716 - +1.7
751,752 + -0.7
751,752 + +1.2
751,752 + -0.0
751,752 + +0.4
751,752 + +0.2
751,794 + -0.3
751,846 - OLJFJH_03960 0.17 -0.3
751,910 - OLJFJH_03960 0.29 -0.1
751,910 - OLJFJH_03960 0.29 +0.4
752,085 + OLJFJH_03960 0.61 -0.9
752,085 + OLJFJH_03960 0.61 -0.4
752,085 + OLJFJH_03960 0.61 +0.6
752,086 - OLJFJH_03960 0.61 +0.0
752,086 - OLJFJH_03960 0.61 -0.1
752,086 - OLJFJH_03960 0.61 -0.0
752,089 + OLJFJH_03960 0.61 +0.7
752,090 - OLJFJH_03960 0.61 +0.5
752,091 + OLJFJH_03960 0.62 -0.5
752,091 + OLJFJH_03960 0.62 +0.0
752,092 - OLJFJH_03960 0.62 +1.0
752,181 + OLJFJH_03960 0.78 +0.6
752,271 + -0.1
752,271 + +0.1
752,271 + +2.6
752,272 - +3.7
752,272 - +1.8
752,272 - -0.6
752,272 - +0.7
752,272 - -0.3
752,429 - -1.1
752,437 - -1.2
752,437 - -1.4
752,569 + -2.1
752,570 - -1.1
752,675 + OLJFJH_03965 0.13 +1.1
752,675 + OLJFJH_03965 0.13 -1.4
752,675 + OLJFJH_03965 0.13 -0.4
752,675 + OLJFJH_03965 0.13 -1.2
752,676 - OLJFJH_03965 0.13 -0.6
752,676 - OLJFJH_03965 0.13 -1.2
752,676 - OLJFJH_03965 0.13 -0.6
752,940 + OLJFJH_03965 0.27 -0.8
752,940 + OLJFJH_03965 0.27 -1.8
753,011 + OLJFJH_03965 0.31 -0.4
753,012 - OLJFJH_03965 0.31 -0.6
753,079 - OLJFJH_03965 0.34 -1.0
753,082 + OLJFJH_03965 0.34 -1.1
753,082 + OLJFJH_03965 0.34 +0.1
753,083 - OLJFJH_03965 0.34 -1.8
753,120 - OLJFJH_03965 0.36 +0.8
753,120 - OLJFJH_03965 0.36 -1.5
753,120 - OLJFJH_03965 0.36 -1.2
753,120 - OLJFJH_03965 0.36 -2.2
753,120 - OLJFJH_03965 0.36 -1.1
753,120 - OLJFJH_03965 0.36 -2.0
753,268 + OLJFJH_03965 0.44 -1.1
753,322 + OLJFJH_03965 0.47 -0.8
753,422 - OLJFJH_03965 0.52 +0.1
753,478 + OLJFJH_03965 0.55 +0.7
753,494 - OLJFJH_03965 0.56 -1.0
753,494 - OLJFJH_03965 0.56 -0.3
753,522 + OLJFJH_03965 0.57 -1.5
753,963 + OLJFJH_03965 0.81 -1.0
754,057 + OLJFJH_03965 0.86 -0.9
754,057 + OLJFJH_03965 0.86 -0.9
754,058 - OLJFJH_03965 0.86 +0.3
754,200 - +1.1
754,213 + -1.0
754,214 - -0.3
754,214 - -0.6
754,335 + -0.4
754,380 - -0.7
754,380 - -0.3
754,643 - +1.7
754,666 - +0.5
754,697 + -1.3
754,701 - +0.4
754,710 + +0.4
754,710 + -0.5
754,710 + -0.2
754,711 - +0.1
754,711 - -1.7
754,729 - +1.6
754,761 + +0.7
754,761 + +0.5
754,761 + +0.1
754,819 + -0.1
754,819 + +0.0
754,819 + -1.3
754,820 - -0.0
754,820 - -1.1
754,820 - -0.4
754,820 - -0.7
754,820 - +0.1
754,820 - -0.4
754,820 - -0.1
754,836 + +0.1
754,836 + +0.2
754,836 + -0.4
754,837 - -0.4
754,840 + -0.6
754,840 + +4.0
754,840 + -2.2
754,840 + -1.0
754,841 - +1.2
754,841 - -0.3
754,841 - -0.6
754,959 + OLJFJH_03970 0.15 +0.0
755,152 - OLJFJH_03970 0.26 +0.1
755,152 - OLJFJH_03970 0.26 -0.1
755,176 - OLJFJH_03970 0.28 -0.9
755,192 - OLJFJH_03970 0.29 -0.6
755,295 - OLJFJH_03970 0.35 -0.9

Or see this region's nucleotide sequence