Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01850 and OLJFJH_01855 are separated by 78 nucleotides OLJFJH_01855 and OLJFJH_01860 are separated by 104 nucleotides OLJFJH_01860 and OLJFJH_01865 are separated by 68 nucleotides
OLJFJH_01850: OLJFJH_01850 - Putative cytoplasmic protein, at 326,771 to 327,250
_01850
OLJFJH_01855: OLJFJH_01855 - type VI secretion system tube protein Hcp, at 327,329 to 327,811
_01855
OLJFJH_01860: OLJFJH_01860 - hypothetical protein, at 327,916 to 328,020
_01860
OLJFJH_01865: OLJFJH_01865 - type VI secretion system contractile sheath large subunit, at 328,089 to 329,588
_01865
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 326.974 kb on + strand, within OLJFJH_01850 at 327.003 kb on - strand, within OLJFJH_01850 at 327.442 kb on - strand, within OLJFJH_01855 at 327.515 kb on - strand, within OLJFJH_01855 at 327.517 kb on + strand, within OLJFJH_01855 at 327.517 kb on + strand, within OLJFJH_01855 at 327.518 kb on - strand, within OLJFJH_01855 at 327.550 kb on + strand, within OLJFJH_01855 at 327.566 kb on + strand, within OLJFJH_01855 at 327.567 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.623 kb on - strand, within OLJFJH_01855 at 327.694 kb on + strand, within OLJFJH_01855 at 327.763 kb on + strand at 327.795 kb on + strand at 327.796 kb on - strand at 327.796 kb on - strand at 327.800 kb on - strand at 327.819 kb on + strand at 327.820 kb on - strand at 327.829 kb on - strand at 327.833 kb on - strand at 327.881 kb on + strand at 327.899 kb on + strand at 327.922 kb on - strand at 327.933 kb on - strand, within OLJFJH_01860 at 327.937 kb on - strand, within OLJFJH_01860 at 328.060 kb on - strand at 328.070 kb on + strand at 328.071 kb on - strand at 328.075 kb on - strand at 328.162 kb on + strand at 328.192 kb on + strand at 328.192 kb on + strand at 328.297 kb on + strand, within OLJFJH_01865 at 328.297 kb on + strand, within OLJFJH_01865 at 328.297 kb on + strand, within OLJFJH_01865 at 328.297 kb on + strand, within OLJFJH_01865 at 328.297 kb on + strand, within OLJFJH_01865 at 328.297 kb on + strand, within OLJFJH_01865 at 328.298 kb on - strand, within OLJFJH_01865 at 328.384 kb on + strand, within OLJFJH_01865 at 328.414 kb on + strand, within OLJFJH_01865 at 328.542 kb on - strand, within OLJFJH_01865 at 328.608 kb on - strand, within OLJFJH_01865 at 328.691 kb on + strand, within OLJFJH_01865 at 328.692 kb on - strand, within OLJFJH_01865 at 328.724 kb on + strand, within OLJFJH_01865 at 328.762 kb on + strand, within OLJFJH_01865 at 328.762 kb on + strand, within OLJFJH_01865 at 328.762 kb on + strand, within OLJFJH_01865 at 328.763 kb on - strand, within OLJFJH_01865 at 328.763 kb on - strand, within OLJFJH_01865 at 328.763 kb on - strand, within OLJFJH_01865
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5 remove 326,974 + OLJFJH_01850 0.42 -0.2 327,003 - OLJFJH_01850 0.48 +0.6 327,442 - OLJFJH_01855 0.23 -0.6 327,515 - OLJFJH_01855 0.39 -0.5 327,517 + OLJFJH_01855 0.39 -0.1 327,517 + OLJFJH_01855 0.39 -1.6 327,518 - OLJFJH_01855 0.39 -0.6 327,550 + OLJFJH_01855 0.46 -0.6 327,566 + OLJFJH_01855 0.49 -0.1 327,567 - OLJFJH_01855 0.49 -0.3 327,576 - OLJFJH_01855 0.51 -0.1 327,576 - OLJFJH_01855 0.51 -2.0 327,576 - OLJFJH_01855 0.51 -0.6 327,623 - OLJFJH_01855 0.61 -0.7 327,694 + OLJFJH_01855 0.76 +5.3 327,763 + -1.0 327,795 + -0.4 327,796 - +0.7 327,796 - -2.6 327,800 - +0.5 327,819 + +0.1 327,820 - +1.4 327,829 - -0.2 327,833 - -0.0 327,881 + -1.3 327,899 + -2.6 327,922 - -0.3 327,933 - OLJFJH_01860 0.16 -2.1 327,937 - OLJFJH_01860 0.20 -0.7 328,060 - -0.9 328,070 + -1.8 328,071 - +1.3 328,075 - -0.3 328,162 + -0.5 328,192 + -2.8 328,192 + -0.5 328,297 + OLJFJH_01865 0.14 -1.9 328,297 + OLJFJH_01865 0.14 -0.9 328,297 + OLJFJH_01865 0.14 -0.5 328,297 + OLJFJH_01865 0.14 -1.5 328,297 + OLJFJH_01865 0.14 -0.9 328,297 + OLJFJH_01865 0.14 -0.6 328,298 - OLJFJH_01865 0.14 -0.2 328,384 + OLJFJH_01865 0.20 +0.3 328,414 + OLJFJH_01865 0.22 -0.6 328,542 - OLJFJH_01865 0.30 -0.1 328,608 - OLJFJH_01865 0.35 +0.7 328,691 + OLJFJH_01865 0.40 -1.6 328,692 - OLJFJH_01865 0.40 +0.9 328,724 + OLJFJH_01865 0.42 -1.1 328,762 + OLJFJH_01865 0.45 -1.6 328,762 + OLJFJH_01865 0.45 -0.1 328,762 + OLJFJH_01865 0.45 -0.8 328,763 - OLJFJH_01865 0.45 +0.6 328,763 - OLJFJH_01865 0.45 -1.3 328,763 - OLJFJH_01865 0.45 +0.4
Or see this region's nucleotide sequence