Strain Fitness in Erwinia amylovora T8 around OLJFJH_01400

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01395 and OLJFJH_01400 are separated by 14 nucleotidesOLJFJH_01400 and OLJFJH_01405 are separated by 469 nucleotides OLJFJH_01395: OLJFJH_01395 - carbamoyl-phosphate synthase large subunit, at 220,548 to 223,772 _01395 OLJFJH_01400: OLJFJH_01400 - carbamoyl phosphate synthase small subunit, at 223,787 to 224,935 _01400 OLJFJH_01405: OLJFJH_01405 - 4-hydroxy-tetrahydrodipicolinate reductase, at 225,405 to 226,226 _01405 Position (kb) 223 224 225Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 223.029 kb on - strand, within OLJFJH_01395at 223.085 kb on + strand, within OLJFJH_01395at 223.224 kb on - strand, within OLJFJH_01395at 223.274 kb on + strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.322 kb on + strand, within OLJFJH_01395at 223.579 kb on + strandat 223.579 kb on + strandat 223.579 kb on + strandat 223.579 kb on + strandat 223.611 kb on - strandat 223.611 kb on - strandat 223.691 kb on - strandat 223.691 kb on - strandat 223.760 kb on + strandat 223.926 kb on - strand, within OLJFJH_01400at 223.949 kb on - strand, within OLJFJH_01400at 224.029 kb on + strand, within OLJFJH_01400at 224.030 kb on - strand, within OLJFJH_01400at 224.032 kb on + strand, within OLJFJH_01400at 224.114 kb on + strand, within OLJFJH_01400at 224.149 kb on + strand, within OLJFJH_01400at 224.314 kb on + strand, within OLJFJH_01400at 224.315 kb on - strand, within OLJFJH_01400at 224.315 kb on - strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.434 kb on - strand, within OLJFJH_01400at 224.434 kb on - strand, within OLJFJH_01400at 224.539 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.543 kb on - strand, within OLJFJH_01400at 224.681 kb on + strand, within OLJFJH_01400at 224.766 kb on + strand, within OLJFJH_01400at 224.770 kb on + strand, within OLJFJH_01400at 224.771 kb on - strand, within OLJFJH_01400at 224.771 kb on - strand, within OLJFJH_01400at 224.793 kb on + strand, within OLJFJH_01400at 224.876 kb on + strandat 224.930 kb on - strandat 225.072 kb on + strandat 225.073 kb on - strandat 225.234 kb on + strandat 225.234 kb on + strandat 225.337 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5
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223,029 - OLJFJH_01395 0.77 -2.4
223,085 + OLJFJH_01395 0.79 -3.7
223,224 - OLJFJH_01395 0.83 -3.0
223,274 + OLJFJH_01395 0.85 -3.6
223,275 - OLJFJH_01395 0.85 -2.5
223,275 - OLJFJH_01395 0.85 -3.3
223,275 - OLJFJH_01395 0.85 -4.6
223,275 - OLJFJH_01395 0.85 -2.8
223,322 + OLJFJH_01395 0.86 -2.6
223,579 + +0.7
223,579 + -4.1
223,579 + -4.0
223,579 + -3.3
223,611 - -3.0
223,611 - -3.2
223,691 - -3.6
223,691 - -2.9
223,760 + -1.0
223,926 - OLJFJH_01400 0.12 -2.4
223,949 - OLJFJH_01400 0.14 -2.5
224,029 + OLJFJH_01400 0.21 -2.8
224,030 - OLJFJH_01400 0.21 -2.0
224,032 + OLJFJH_01400 0.21 -3.6
224,114 + OLJFJH_01400 0.28 -3.0
224,149 + OLJFJH_01400 0.32 -1.3
224,314 + OLJFJH_01400 0.46 -3.4
224,315 - OLJFJH_01400 0.46 -2.3
224,315 - OLJFJH_01400 0.46 -2.8
224,326 + OLJFJH_01400 0.47 -0.5
224,326 + OLJFJH_01400 0.47 -3.0
224,326 + OLJFJH_01400 0.47 -1.4
224,431 + OLJFJH_01400 0.56 -1.4
224,431 + OLJFJH_01400 0.56 -2.7
224,431 + OLJFJH_01400 0.56 -2.9
224,431 + OLJFJH_01400 0.56 -2.7
224,431 + OLJFJH_01400 0.56 -1.7
224,431 + OLJFJH_01400 0.56 +1.1
224,431 + OLJFJH_01400 0.56 -2.7
224,431 + OLJFJH_01400 0.56 -2.0
224,432 - OLJFJH_01400 0.56 -3.1
224,432 - OLJFJH_01400 0.56 -2.5
224,432 - OLJFJH_01400 0.56 -2.7
224,432 - OLJFJH_01400 0.56 -0.7
224,432 - OLJFJH_01400 0.56 -0.1
224,432 - OLJFJH_01400 0.56 -3.1
224,432 - OLJFJH_01400 0.56 -5.7
224,432 - OLJFJH_01400 0.56 -1.0
224,432 - OLJFJH_01400 0.56 -1.4
224,432 - OLJFJH_01400 0.56 -1.4
224,432 - OLJFJH_01400 0.56 -3.4
224,432 - OLJFJH_01400 0.56 -2.5
224,432 - OLJFJH_01400 0.56 -3.4
224,432 - OLJFJH_01400 0.56 -0.9
224,432 - OLJFJH_01400 0.56 -3.1
224,432 - OLJFJH_01400 0.56 -3.6
224,434 - OLJFJH_01400 0.56 -4.0
224,434 - OLJFJH_01400 0.56 -4.9
224,539 + OLJFJH_01400 0.65 -1.6
224,542 + OLJFJH_01400 0.66 -1.6
224,542 + OLJFJH_01400 0.66 -3.1
224,542 + OLJFJH_01400 0.66 -3.5
224,543 - OLJFJH_01400 0.66 -2.3
224,681 + OLJFJH_01400 0.78 -3.3
224,766 + OLJFJH_01400 0.85 -1.1
224,770 + OLJFJH_01400 0.86 -2.6
224,771 - OLJFJH_01400 0.86 -2.7
224,771 - OLJFJH_01400 0.86 +1.4
224,793 + OLJFJH_01400 0.88 -1.7
224,876 + -2.9
224,930 - -1.5
225,072 + +0.2
225,073 - -0.3
225,234 + -0.3
225,234 + +0.2
225,337 + -0.1

Or see this region's nucleotide sequence