Strain Fitness in Erwinia amylovora T8 around OLJFJH_00645

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00640 and OLJFJH_00645 are separated by 93 nucleotidesOLJFJH_00645 and OLJFJH_00650 are separated by 95 nucleotides OLJFJH_00640: OLJFJH_00640 - type I methionyl aminopeptidase, at 39,958 to 40,752 _00640 OLJFJH_00645: OLJFJH_00645 - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 40,846 to 43,503 _00645 OLJFJH_00650: OLJFJH_00650 - 2 3 4 5-tetrahydropyridine-2 6-dicarboxylate N-succinyltransferase, at 43,599 to 44,423 _00650 Position (kb) 40 41 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2 3at 40.755 kb on + strandat 40.797 kb on + strandat 40.797 kb on + strandat 40.798 kb on - strandat 40.800 kb on + strandat 40.801 kb on - strandat 40.801 kb on - strandat 40.801 kb on - strandat 41.879 kb on + strand, within OLJFJH_00645at 41.912 kb on + strand, within OLJFJH_00645at 41.912 kb on + strand, within OLJFJH_00645at 44.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-5
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40,755 + +1.8
40,797 + +3.0
40,797 + -0.2
40,798 - +0.2
40,800 + +0.4
40,801 - -0.8
40,801 - +0.0
40,801 - +0.8
41,879 + OLJFJH_00645 0.39 -2.0
41,912 + OLJFJH_00645 0.40 -0.9
41,912 + OLJFJH_00645 0.40 -0.6
44,460 - -0.9

Or see this region's nucleotide sequence