Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mASE1 and JDDGAC_28375 overlap by 23 nucleotides JDDGAC_28375 and udk are separated by 317 nucleotides
JDDGAC_28370: mASE1 - diguanylate cyclase, at 5,436,805 to 5,439,612
mASE1
JDDGAC_28375: JDDGAC_28375 - Putative diguanylate cyclase YegE, at 5,439,590 to 5,440,123
_28375
JDDGAC_28380: udk - uridine kinase, at 5,440,441 to 5,441,082
udk
Position (kb) 5439
5440
5441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5438.906 kb on + strand, within mASE1 at 5438.981 kb on + strand, within mASE1 at 5438.982 kb on - strand, within mASE1 at 5438.982 kb on - strand, within mASE1 at 5438.984 kb on + strand, within mASE1 at 5439.003 kb on - strand, within mASE1 at 5439.003 kb on - strand, within mASE1 at 5439.051 kb on + strand, within mASE1 at 5439.173 kb on - strand, within mASE1 at 5439.260 kb on + strand, within mASE1 at 5439.260 kb on + strand, within mASE1 at 5439.261 kb on - strand, within mASE1 at 5439.261 kb on - strand, within mASE1 at 5439.321 kb on + strand, within mASE1 at 5439.335 kb on + strand at 5439.339 kb on + strand at 5439.339 kb on + strand at 5439.340 kb on - strand at 5439.340 kb on - strand at 5439.492 kb on - strand at 5439.492 kb on - strand at 5439.492 kb on - strand at 5439.511 kb on + strand at 5439.581 kb on + strand at 5439.582 kb on - strand at 5439.644 kb on - strand, within JDDGAC_28375 at 5439.650 kb on - strand, within JDDGAC_28375 at 5439.780 kb on + strand, within JDDGAC_28375 at 5439.832 kb on + strand, within JDDGAC_28375 at 5439.832 kb on + strand, within JDDGAC_28375 at 5440.053 kb on - strand, within JDDGAC_28375 at 5440.100 kb on + strand at 5440.100 kb on + strand at 5440.101 kb on - strand at 5440.101 kb on - strand at 5440.176 kb on + strand at 5440.176 kb on + strand at 5440.214 kb on + strand at 5440.251 kb on + strand at 5440.251 kb on + strand at 5440.271 kb on - strand at 5440.287 kb on + strand at 5440.288 kb on - strand at 5440.375 kb on + strand at 5440.411 kb on - strand at 5440.435 kb on - strand at 5440.438 kb on + strand at 5440.438 kb on + strand at 5440.438 kb on + strand at 5440.439 kb on - strand at 5440.439 kb on - strand at 5440.441 kb on - strand at 5440.510 kb on - strand, within udk at 5440.626 kb on + strand, within udk at 5440.636 kb on + strand, within udk at 5440.636 kb on + strand, within udk at 5440.637 kb on - strand, within udk at 5440.682 kb on + strand, within udk at 5440.729 kb on + strand, within udk at 5440.729 kb on + strand, within udk at 5440.730 kb on - strand, within udk at 5440.730 kb on - strand, within udk at 5440.730 kb on - strand, within udk at 5440.730 kb on - strand, within udk at 5440.741 kb on - strand, within udk at 5440.837 kb on - strand, within udk at 5440.989 kb on + strand, within udk at 5441.008 kb on - strand, within udk at 5441.008 kb on - strand, within udk at 5441.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 5,438,906 + mASE1 JDDGAC_28370 0.75 -0.8 5,438,981 + mASE1 JDDGAC_28370 0.77 -2.0 5,438,982 - mASE1 JDDGAC_28370 0.78 -0.5 5,438,982 - mASE1 JDDGAC_28370 0.78 +1.4 5,438,984 + mASE1 JDDGAC_28370 0.78 +0.7 5,439,003 - mASE1 JDDGAC_28370 0.78 -0.7 5,439,003 - mASE1 JDDGAC_28370 0.78 +1.1 5,439,051 + mASE1 JDDGAC_28370 0.80 -1.0 5,439,173 - mASE1 JDDGAC_28370 0.84 +2.5 5,439,260 + mASE1 JDDGAC_28370 0.87 +0.2 5,439,260 + mASE1 JDDGAC_28370 0.87 -0.2 5,439,261 - mASE1 JDDGAC_28370 0.87 -0.8 5,439,261 - mASE1 JDDGAC_28370 0.87 -2.7 5,439,321 + mASE1 JDDGAC_28370 0.90 -0.3 5,439,335 + -2.9 5,439,339 + -0.8 5,439,339 + -0.3 5,439,340 - +1.2 5,439,340 - -1.0 5,439,492 - -1.3 5,439,492 - +1.2 5,439,492 - +0.0 5,439,511 + -0.3 5,439,581 + -0.1 5,439,582 - -0.1 5,439,644 - JDDGAC_28375 0.10 -1.2 5,439,650 - JDDGAC_28375 0.11 -1.6 5,439,780 + JDDGAC_28375 0.36 +0.9 5,439,832 + JDDGAC_28375 0.45 +0.4 5,439,832 + JDDGAC_28375 0.45 +2.2 5,440,053 - JDDGAC_28375 0.87 -2.3 5,440,100 + +1.7 5,440,100 + +0.5 5,440,101 - -2.1 5,440,101 - -1.2 5,440,176 + +0.7 5,440,176 + -1.2 5,440,214 + +0.4 5,440,251 + -2.5 5,440,251 + +0.9 5,440,271 - -0.5 5,440,287 + +1.6 5,440,288 - -0.9 5,440,375 + -0.1 5,440,411 - -1.0 5,440,435 - -0.1 5,440,438 + -0.5 5,440,438 + +0.8 5,440,438 + +0.7 5,440,439 - -1.8 5,440,439 - -1.9 5,440,441 - -2.8 5,440,510 - udk JDDGAC_28380 0.11 -1.4 5,440,626 + udk JDDGAC_28380 0.29 +1.5 5,440,636 + udk JDDGAC_28380 0.30 -2.5 5,440,636 + udk JDDGAC_28380 0.30 +1.6 5,440,637 - udk JDDGAC_28380 0.31 +4.8 5,440,682 + udk JDDGAC_28380 0.38 -0.9 5,440,729 + udk JDDGAC_28380 0.45 -3.0 5,440,729 + udk JDDGAC_28380 0.45 -0.2 5,440,730 - udk JDDGAC_28380 0.45 -0.4 5,440,730 - udk JDDGAC_28380 0.45 -1.1 5,440,730 - udk JDDGAC_28380 0.45 +0.5 5,440,730 - udk JDDGAC_28380 0.45 -0.8 5,440,741 - udk JDDGAC_28380 0.47 -1.2 5,440,837 - udk JDDGAC_28380 0.62 +0.1 5,440,989 + udk JDDGAC_28380 0.85 +0.8 5,441,008 - udk JDDGAC_28380 0.88 +0.2 5,441,008 - udk JDDGAC_28380 0.88 +0.1 5,441,080 + +0.3
Or see this region's nucleotide sequence