Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pmrD and arnF overlap by 7 nucleotides arnF and arnE overlap by 1 nucleotides arnE and arnT overlap by 4 nucleotides arnT and arnD overlap by 1 nucleotides arnD and arnA overlap by 4 nucleotides
JDDGAC_26925: pmrD - signal transduction protein PmrD, at 5,158,219 to 5,158,485
pmrD
JDDGAC_26930: arnF - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 5,158,479 to 5,158,865
arnF
JDDGAC_26935: arnE - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 5,158,865 to 5,159,200
arnE
JDDGAC_26940: arnT - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 5,159,197 to 5,160,849
arnT
JDDGAC_26945: arnD - 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase, at 5,160,849 to 5,161,739
arnD
JDDGAC_26950: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 5,161,736 to 5,163,718
arnA
Position (kb) 5159
5160
5161 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5158.212 kb on + strand at 5158.215 kb on + strand at 5158.252 kb on - strand, within pmrD at 5158.260 kb on + strand, within pmrD at 5158.260 kb on + strand, within pmrD at 5158.271 kb on + strand, within pmrD at 5158.271 kb on + strand, within pmrD at 5158.271 kb on + strand, within pmrD at 5158.271 kb on + strand, within pmrD at 5158.271 kb on + strand, within pmrD at 5158.272 kb on - strand, within pmrD at 5158.272 kb on - strand, within pmrD at 5158.272 kb on - strand, within pmrD at 5158.272 kb on - strand, within pmrD at 5158.272 kb on - strand, within pmrD at 5158.276 kb on - strand, within pmrD at 5158.276 kb on - strand, within pmrD at 5158.276 kb on - strand, within pmrD at 5158.276 kb on - strand, within pmrD at 5158.384 kb on - strand, within pmrD at 5158.405 kb on - strand, within pmrD at 5158.461 kb on + strand at 5158.462 kb on - strand at 5158.533 kb on - strand, within arnF at 5158.636 kb on + strand, within arnF at 5158.636 kb on + strand, within arnF at 5158.658 kb on + strand, within arnF at 5158.659 kb on - strand, within arnF at 5158.659 kb on - strand, within arnF at 5158.662 kb on + strand, within arnF at 5158.663 kb on - strand, within arnF at 5158.744 kb on - strand, within arnF at 5158.768 kb on - strand, within arnF at 5158.812 kb on + strand, within arnF at 5158.833 kb on - strand at 5158.866 kb on + strand at 5158.874 kb on - strand at 5158.991 kb on + strand, within arnE at 5158.992 kb on - strand, within arnE at 5158.992 kb on - strand, within arnE at 5158.992 kb on - strand, within arnE at 5159.008 kb on + strand, within arnE at 5159.008 kb on + strand, within arnE at 5159.013 kb on - strand, within arnE at 5159.096 kb on - strand, within arnE at 5159.096 kb on - strand, within arnE at 5159.311 kb on - strand at 5159.311 kb on - strand at 5159.313 kb on + strand at 5159.314 kb on - strand at 5159.314 kb on - strand at 5159.314 kb on - strand at 5159.395 kb on - strand, within arnT at 5159.403 kb on - strand, within arnT at 5159.426 kb on + strand, within arnT at 5159.427 kb on - strand, within arnT at 5159.497 kb on - strand, within arnT at 5159.499 kb on - strand, within arnT at 5159.657 kb on + strand, within arnT at 5159.711 kb on + strand, within arnT at 5159.712 kb on - strand, within arnT at 5159.712 kb on - strand, within arnT at 5159.712 kb on - strand, within arnT at 5159.779 kb on - strand, within arnT at 5159.861 kb on + strand, within arnT at 5159.862 kb on - strand, within arnT at 5159.904 kb on + strand, within arnT at 5159.906 kb on + strand, within arnT at 5159.906 kb on + strand, within arnT at 5159.907 kb on - strand, within arnT at 5159.907 kb on - strand, within arnT at 5159.907 kb on - strand, within arnT at 5159.925 kb on + strand, within arnT at 5159.925 kb on + strand, within arnT at 5160.011 kb on + strand, within arnT at 5160.011 kb on + strand, within arnT at 5160.012 kb on - strand, within arnT at 5160.012 kb on - strand, within arnT at 5160.012 kb on - strand, within arnT at 5160.014 kb on - strand, within arnT at 5160.014 kb on - strand, within arnT at 5160.090 kb on + strand, within arnT at 5160.090 kb on + strand, within arnT at 5160.091 kb on - strand, within arnT at 5160.091 kb on - strand, within arnT at 5160.203 kb on - strand, within arnT at 5160.230 kb on + strand, within arnT at 5160.234 kb on + strand, within arnT at 5160.286 kb on + strand, within arnT at 5160.458 kb on + strand, within arnT at 5160.459 kb on - strand, within arnT at 5160.459 kb on - strand, within arnT at 5160.459 kb on - strand, within arnT at 5160.481 kb on - strand, within arnT at 5160.481 kb on - strand, within arnT at 5160.499 kb on + strand, within arnT at 5160.525 kb on + strand, within arnT at 5160.536 kb on - strand, within arnT at 5160.546 kb on + strand, within arnT at 5160.546 kb on + strand, within arnT at 5160.571 kb on + strand, within arnT at 5160.626 kb on - strand, within arnT at 5160.678 kb on - strand, within arnT at 5160.798 kb on - strand at 5160.800 kb on + strand at 5160.800 kb on + strand at 5160.800 kb on + strand at 5160.811 kb on - strand at 5160.834 kb on - strand at 5160.839 kb on - strand at 5161.049 kb on + strand, within arnD at 5161.052 kb on - strand, within arnD at 5161.356 kb on - strand, within arnD at 5161.441 kb on + strand, within arnD at 5161.490 kb on + strand, within arnD at 5161.506 kb on - strand, within arnD at 5161.649 kb on + strand, within arnD at 5161.649 kb on + strand, within arnD at 5161.650 kb on - strand, within arnD at 5161.655 kb on + strand at 5161.655 kb on + strand at 5161.722 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 5,158,212 + -1.3 5,158,215 + -1.3 5,158,252 - pmrD JDDGAC_26925 0.12 -0.9 5,158,260 + pmrD JDDGAC_26925 0.15 +1.1 5,158,260 + pmrD JDDGAC_26925 0.15 +1.6 5,158,271 + pmrD JDDGAC_26925 0.19 -2.1 5,158,271 + pmrD JDDGAC_26925 0.19 -0.9 5,158,271 + pmrD JDDGAC_26925 0.19 -0.2 5,158,271 + pmrD JDDGAC_26925 0.19 +0.1 5,158,271 + pmrD JDDGAC_26925 0.19 -0.0 5,158,272 - pmrD JDDGAC_26925 0.20 +0.4 5,158,272 - pmrD JDDGAC_26925 0.20 +1.0 5,158,272 - pmrD JDDGAC_26925 0.20 -1.8 5,158,272 - pmrD JDDGAC_26925 0.20 -1.6 5,158,272 - pmrD JDDGAC_26925 0.20 +0.2 5,158,276 - pmrD JDDGAC_26925 0.21 -0.1 5,158,276 - pmrD JDDGAC_26925 0.21 -0.8 5,158,276 - pmrD JDDGAC_26925 0.21 +1.8 5,158,276 - pmrD JDDGAC_26925 0.21 +0.3 5,158,384 - pmrD JDDGAC_26925 0.62 +0.6 5,158,405 - pmrD JDDGAC_26925 0.70 -0.4 5,158,461 + -1.0 5,158,462 - -1.1 5,158,533 - arnF JDDGAC_26930 0.14 -3.9 5,158,636 + arnF JDDGAC_26930 0.41 -2.5 5,158,636 + arnF JDDGAC_26930 0.41 -1.5 5,158,658 + arnF JDDGAC_26930 0.46 -0.4 5,158,659 - arnF JDDGAC_26930 0.47 -2.6 5,158,659 - arnF JDDGAC_26930 0.47 -3.8 5,158,662 + arnF JDDGAC_26930 0.47 -3.2 5,158,663 - arnF JDDGAC_26930 0.48 -1.6 5,158,744 - arnF JDDGAC_26930 0.68 -2.1 5,158,768 - arnF JDDGAC_26930 0.75 +0.6 5,158,812 + arnF JDDGAC_26930 0.86 -3.3 5,158,833 - -0.6 5,158,866 + -1.8 5,158,874 - -0.4 5,158,991 + arnE JDDGAC_26935 0.38 -3.8 5,158,992 - arnE JDDGAC_26935 0.38 -0.8 5,158,992 - arnE JDDGAC_26935 0.38 -3.4 5,158,992 - arnE JDDGAC_26935 0.38 -4.4 5,159,008 + arnE JDDGAC_26935 0.43 -0.3 5,159,008 + arnE JDDGAC_26935 0.43 -2.7 5,159,013 - arnE JDDGAC_26935 0.44 -1.0 5,159,096 - arnE JDDGAC_26935 0.69 -3.0 5,159,096 - arnE JDDGAC_26935 0.69 -3.5 5,159,311 - -1.6 5,159,311 - -2.3 5,159,313 + -2.8 5,159,314 - -4.3 5,159,314 - -0.0 5,159,314 - +1.2 5,159,395 - arnT JDDGAC_26940 0.12 -0.7 5,159,403 - arnT JDDGAC_26940 0.12 -1.6 5,159,426 + arnT JDDGAC_26940 0.14 -2.2 5,159,427 - arnT JDDGAC_26940 0.14 -2.0 5,159,497 - arnT JDDGAC_26940 0.18 -1.0 5,159,499 - arnT JDDGAC_26940 0.18 +0.9 5,159,657 + arnT JDDGAC_26940 0.28 -0.4 5,159,711 + arnT JDDGAC_26940 0.31 -1.6 5,159,712 - arnT JDDGAC_26940 0.31 +0.1 5,159,712 - arnT JDDGAC_26940 0.31 +0.1 5,159,712 - arnT JDDGAC_26940 0.31 -0.8 5,159,779 - arnT JDDGAC_26940 0.35 -1.5 5,159,861 + arnT JDDGAC_26940 0.40 -1.4 5,159,862 - arnT JDDGAC_26940 0.40 -1.8 5,159,904 + arnT JDDGAC_26940 0.43 -3.6 5,159,906 + arnT JDDGAC_26940 0.43 -4.1 5,159,906 + arnT JDDGAC_26940 0.43 -0.7 5,159,907 - arnT JDDGAC_26940 0.43 -2.0 5,159,907 - arnT JDDGAC_26940 0.43 -0.7 5,159,907 - arnT JDDGAC_26940 0.43 -1.5 5,159,925 + arnT JDDGAC_26940 0.44 -4.1 5,159,925 + arnT JDDGAC_26940 0.44 -4.1 5,160,011 + arnT JDDGAC_26940 0.49 -2.4 5,160,011 + arnT JDDGAC_26940 0.49 -2.8 5,160,012 - arnT JDDGAC_26940 0.49 +0.7 5,160,012 - arnT JDDGAC_26940 0.49 -1.3 5,160,012 - arnT JDDGAC_26940 0.49 -1.6 5,160,014 - arnT JDDGAC_26940 0.49 -1.6 5,160,014 - arnT JDDGAC_26940 0.49 -1.5 5,160,090 + arnT JDDGAC_26940 0.54 -2.9 5,160,090 + arnT JDDGAC_26940 0.54 -3.4 5,160,091 - arnT JDDGAC_26940 0.54 -0.0 5,160,091 - arnT JDDGAC_26940 0.54 -0.4 5,160,203 - arnT JDDGAC_26940 0.61 -2.0 5,160,230 + arnT JDDGAC_26940 0.62 -1.4 5,160,234 + arnT JDDGAC_26940 0.63 -1.8 5,160,286 + arnT JDDGAC_26940 0.66 -3.0 5,160,458 + arnT JDDGAC_26940 0.76 -2.3 5,160,459 - arnT JDDGAC_26940 0.76 -3.4 5,160,459 - arnT JDDGAC_26940 0.76 -4.1 5,160,459 - arnT JDDGAC_26940 0.76 -0.8 5,160,481 - arnT JDDGAC_26940 0.78 -0.5 5,160,481 - arnT JDDGAC_26940 0.78 -3.3 5,160,499 + arnT JDDGAC_26940 0.79 -3.2 5,160,525 + arnT JDDGAC_26940 0.80 -2.1 5,160,536 - arnT JDDGAC_26940 0.81 -1.8 5,160,546 + arnT JDDGAC_26940 0.82 +0.4 5,160,546 + arnT JDDGAC_26940 0.82 -4.2 5,160,571 + arnT JDDGAC_26940 0.83 -3.9 5,160,626 - arnT JDDGAC_26940 0.86 -0.3 5,160,678 - arnT JDDGAC_26940 0.90 -2.1 5,160,798 - -3.0 5,160,800 + -1.9 5,160,800 + -2.3 5,160,800 + -0.9 5,160,811 - -2.7 5,160,834 - -1.8 5,160,839 - -1.0 5,161,049 + arnD JDDGAC_26945 0.22 -1.8 5,161,052 - arnD JDDGAC_26945 0.23 -1.1 5,161,356 - arnD JDDGAC_26945 0.57 -2.9 5,161,441 + arnD JDDGAC_26945 0.66 -3.4 5,161,490 + arnD JDDGAC_26945 0.72 -2.7 5,161,506 - arnD JDDGAC_26945 0.74 -2.4 5,161,649 + arnD JDDGAC_26945 0.90 -2.9 5,161,649 + arnD JDDGAC_26945 0.90 -2.6 5,161,650 - arnD JDDGAC_26945 0.90 -2.3 5,161,655 + -3.6 5,161,655 + -4.5 5,161,722 + -3.0
Or see this region's nucleotide sequence