Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24555

Experiment: WM_EV240

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_EV240
4,700,701	-	ygaP	JDDGAC_24540	0.56	+1.9
4,700,803	-	ygaP	JDDGAC_24540	0.75	+0.7
4,700,889	+				+0.6
4,700,951	-				+1.7
4,700,951	-				+1.0
4,701,004	+	ygaV	JDDGAC_24545	0.21	-2.0
4,701,007	-	ygaV	JDDGAC_24545	0.22	+0.3
4,701,038	+	ygaV	JDDGAC_24545	0.33	+3.4
4,701,038	+	ygaV	JDDGAC_24545	0.33	+1.4
4,701,039	-	ygaV	JDDGAC_24545	0.33	+1.1
4,701,039	-	ygaV	JDDGAC_24545	0.33	-0.1
4,701,057	-	ygaV	JDDGAC_24545	0.39	+1.2
4,701,292	+				+0.8
4,701,292	+				+0.1
4,701,292	+				-2.7
4,701,330	-				+0.3
4,701,417	+				+1.3
4,701,422	-				-1.8
4,701,481	+	yqaE	JDDGAC_24550	0.37	-0.7
4,701,509	-	yqaE	JDDGAC_24550	0.55	+0.4
4,701,511	+	yqaE	JDDGAC_24550	0.56	-0.2
4,701,511	+	yqaE	JDDGAC_24550	0.56	-2.7
4,701,534	-	yqaE	JDDGAC_24550	0.70	-1.8
4,701,534	-	yqaE	JDDGAC_24550	0.70	+0.6
4,701,535	+	yqaE	JDDGAC_24550	0.71	-0.0
4,701,535	+	yqaE	JDDGAC_24550	0.71	-3.3
4,701,578	+				-2.0
4,701,625	+				-0.8
4,701,625	+				+0.2
4,701,659	+				-1.4
4,701,660	-				+0.1
4,701,663	+				-1.2
4,701,663	+				+0.7
4,701,664	-				-0.3
4,701,961	-	kbp	JDDGAC_24555	0.66	-2.8
4,702,007	-	kbp	JDDGAC_24555	0.76	-0.2
4,702,007	-	kbp	JDDGAC_24555	0.76	+0.6
4,702,025	-	kbp	JDDGAC_24555	0.80	-0.1
4,702,029	+	kbp	JDDGAC_24555	0.81	+1.6
4,702,029	+	kbp	JDDGAC_24555	0.81	+0.2
4,702,029	+	kbp	JDDGAC_24555	0.81	-0.1
4,702,059	-	kbp	JDDGAC_24555	0.88	+0.4
4,702,098	+				+0.0
4,702,116	-				+0.4
4,702,116	-				-2.2
4,702,116	-				-0.1
4,702,159	+				+0.8
4,702,160	-				-0.3
4,702,174	+				-3.0
4,702,175	-				+1.3
4,702,175	-				-1.9
4,702,207	+	csiR	JDDGAC_24560	0.14	-2.4
4,702,287	+	csiR	JDDGAC_24560	0.26	+0.4
4,702,288	-	csiR	JDDGAC_24560	0.26	-0.3
4,702,340	+	csiR	JDDGAC_24560	0.34	-4.0
4,702,372	-	csiR	JDDGAC_24560	0.39	-0.9
4,702,514	-	csiR	JDDGAC_24560	0.60	+0.4
4,702,514	-	csiR	JDDGAC_24560	0.60	-0.9
4,702,572	+	csiR	JDDGAC_24560	0.69	-0.1
4,702,573	-	csiR	JDDGAC_24560	0.69	+0.2
4,702,697	-	csiR	JDDGAC_24560	0.88	-0.8
4,702,731	+				+0.1
4,702,751	+				-0.3
4,702,767	+				-1.5
4,702,834	-				-1.6
4,702,875	-				+0.7
4,702,912	-				-1.1
4,702,956	-	gabP	JDDGAC_24565	0.11	+0.4
4,702,958	+	gabP	JDDGAC_24565	0.11	+0.6
4,702,958	+	gabP	JDDGAC_24565	0.11	-0.7
4,702,958	+	gabP	JDDGAC_24565	0.11	-0.8
4,702,959	-	gabP	JDDGAC_24565	0.12	-0.4
4,703,039	+	gabP	JDDGAC_24565	0.17	-2.7
4,703,070	+	gabP	JDDGAC_24565	0.19	-2.3
4,703,071	-	gabP	JDDGAC_24565	0.20	+3.1