Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt csrA and Ser_trna are separated by 315 nucleotides Ser_trna and Arg_trna are separated by 3 nucleotides Arg_trna and Arg_trna are separated by 64 nucleotides Arg_trna and Arg_trna are separated by 62 nucleotides Arg_trna and Arg_trna are separated by 102 nucleotides Arg_trna and yqaB are separated by 280 nucleotides yqaB and yqaA overlap by 4 nucleotides
JDDGAC_24385: csrA - carbon storage regulator CsrA, at 4,677,563 to 4,677,748
csrA
JDDGAC_24390: Ser_trna - tRNA-Ser(gct), at 4,678,064 to 4,678,156
_trna
JDDGAC_24395: Arg_trna - tRNA-Arg(acg), at 4,678,160 to 4,678,236
_trna
JDDGAC_24400: Arg_trna - tRNA-Arg(acg), at 4,678,301 to 4,678,377
_trna
JDDGAC_24405: Arg_trna - tRNA-Arg(acg), at 4,678,440 to 4,678,516
_trna
JDDGAC_24410: Arg_trna - tRNA-Arg(acg), at 4,678,619 to 4,678,695
_trna
JDDGAC_24415: yqaB - fructose-1-phosphate/6-phosphogluconate phosphatase, at 4,678,976 to 4,679,542
yqaB
JDDGAC_24420: yqaA - Inner membrane protein YqaA, at 4,679,539 to 4,679,967
yqaA
Position (kb) 4678
4679 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4677.743 kb on + strand at 4677.746 kb on + strand at 4677.807 kb on - strand at 4677.807 kb on - strand at 4677.841 kb on + strand at 4677.841 kb on + strand at 4677.841 kb on + strand at 4677.862 kb on + strand at 4677.868 kb on + strand at 4677.869 kb on - strand at 4677.869 kb on - strand at 4677.897 kb on + strand at 4677.898 kb on - strand at 4677.920 kb on + strand at 4677.928 kb on - strand at 4678.242 kb on + strand at 4678.242 kb on + strand at 4678.383 kb on + strand at 4678.390 kb on + strand at 4678.427 kb on + strand at 4678.561 kb on + strand at 4678.576 kb on + strand at 4678.591 kb on + strand at 4678.591 kb on + strand at 4678.600 kb on + strand at 4678.640 kb on - strand, within Arg_trna at 4678.696 kb on + strand at 4678.696 kb on + strand at 4678.777 kb on + strand at 4678.868 kb on - strand at 4678.875 kb on + strand at 4678.876 kb on - strand at 4678.945 kb on - strand at 4679.047 kb on + strand, within yqaB at 4679.048 kb on - strand, within yqaB at 4679.064 kb on + strand, within yqaB at 4679.075 kb on + strand, within yqaB at 4679.087 kb on + strand, within yqaB at 4679.088 kb on - strand, within yqaB at 4679.149 kb on + strand, within yqaB at 4679.149 kb on + strand, within yqaB at 4679.150 kb on - strand, within yqaB at 4679.150 kb on - strand, within yqaB at 4679.150 kb on - strand, within yqaB at 4679.218 kb on + strand, within yqaB at 4679.218 kb on + strand, within yqaB at 4679.219 kb on - strand, within yqaB at 4679.230 kb on + strand, within yqaB at 4679.358 kb on - strand, within yqaB at 4679.592 kb on + strand, within yqaA at 4679.597 kb on + strand, within yqaA at 4679.597 kb on + strand, within yqaA at 4679.598 kb on - strand, within yqaA at 4679.600 kb on + strand, within yqaA at 4679.666 kb on + strand, within yqaA at 4679.688 kb on + strand, within yqaA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 4,677,743 + +1.1 4,677,746 + +0.5 4,677,807 - -1.1 4,677,807 - -0.8 4,677,841 + +0.7 4,677,841 + -1.8 4,677,841 + +0.1 4,677,862 + +0.2 4,677,868 + -1.1 4,677,869 - -1.0 4,677,869 - -2.8 4,677,897 + +0.1 4,677,898 - +0.9 4,677,920 + +0.4 4,677,928 - -0.5 4,678,242 + -1.4 4,678,242 + +1.0 4,678,383 + +0.3 4,678,390 + -1.3 4,678,427 + -3.6 4,678,561 + +1.6 4,678,576 + -0.3 4,678,591 + +0.9 4,678,591 + -0.5 4,678,600 + +0.8 4,678,640 - Arg_trna JDDGAC_24410 0.27 -1.6 4,678,696 + +0.1 4,678,696 + -0.9 4,678,777 + +0.1 4,678,868 - -0.6 4,678,875 + +0.7 4,678,876 - -0.8 4,678,945 - +0.5 4,679,047 + yqaB JDDGAC_24415 0.13 -1.1 4,679,048 - yqaB JDDGAC_24415 0.13 +0.4 4,679,064 + yqaB JDDGAC_24415 0.16 -2.8 4,679,075 + yqaB JDDGAC_24415 0.17 +0.7 4,679,087 + yqaB JDDGAC_24415 0.20 +1.3 4,679,088 - yqaB JDDGAC_24415 0.20 +1.1 4,679,149 + yqaB JDDGAC_24415 0.31 +1.0 4,679,149 + yqaB JDDGAC_24415 0.31 +0.2 4,679,150 - yqaB JDDGAC_24415 0.31 +0.1 4,679,150 - yqaB JDDGAC_24415 0.31 +0.8 4,679,150 - yqaB JDDGAC_24415 0.31 -1.8 4,679,218 + yqaB JDDGAC_24415 0.43 -3.3 4,679,218 + yqaB JDDGAC_24415 0.43 +0.2 4,679,219 - yqaB JDDGAC_24415 0.43 -0.7 4,679,230 + yqaB JDDGAC_24415 0.45 -0.6 4,679,358 - yqaB JDDGAC_24415 0.67 +0.5 4,679,592 + yqaA JDDGAC_24420 0.12 -0.4 4,679,597 + yqaA JDDGAC_24420 0.14 -1.4 4,679,597 + yqaA JDDGAC_24420 0.14 +1.2 4,679,598 - yqaA JDDGAC_24420 0.14 -1.9 4,679,600 + yqaA JDDGAC_24420 0.14 -0.2 4,679,666 + yqaA JDDGAC_24420 0.30 -1.0 4,679,688 + yqaA JDDGAC_24420 0.35 -0.3
Or see this region's nucleotide sequence