Strain Fitness in Escherichia coli ECRC98 around JDDGAC_22540

Experiment: WM_EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntparC_S129P and plsC are separated by 233 nucleotidesplsC and ftsP are separated by 74 nucleotides JDDGAC_22535: parC_S129P - DNA topoisomerase IV subunit A ParC, at 4,311,648 to 4,313,906 _S129P JDDGAC_22540: plsC - 1-acylglycerol-3-phosphate O-acyltransferase, at 4,314,140 to 4,314,877 plsC JDDGAC_22545: ftsP - cell division protein FtsP, at 4,314,952 to 4,316,364 ftsP Position (kb) 4314 4315Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4313.847 kb on - strandat 4313.904 kb on + strandat 4313.904 kb on + strandat 4313.905 kb on - strandat 4313.982 kb on + strandat 4313.983 kb on - strandat 4313.983 kb on - strandat 4314.028 kb on - strandat 4314.050 kb on + strandat 4314.075 kb on - strandat 4314.105 kb on + strandat 4314.105 kb on + strandat 4314.106 kb on - strandat 4314.106 kb on - strandat 4314.875 kb on + strandat 4314.891 kb on - strandat 4314.920 kb on + strandat 4314.924 kb on - strandat 4315.128 kb on + strand, within ftsPat 4315.213 kb on - strand, within ftsP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
remove
4,313,847 - -2.4
4,313,904 + -0.2
4,313,904 + +0.3
4,313,905 - -1.5
4,313,982 + +0.0
4,313,983 - +0.9
4,313,983 - +0.5
4,314,028 - +1.2
4,314,050 + +0.4
4,314,075 - -1.9
4,314,105 + -0.7
4,314,105 + -1.3
4,314,106 - +3.4
4,314,106 - +3.9
4,314,875 + +1.0
4,314,891 - +0.1
4,314,920 + -1.3
4,314,924 - +2.5
4,315,128 + ftsP JDDGAC_22545 0.12 -0.1
4,315,213 - ftsP JDDGAC_22545 0.18 -1.4

Or see this region's nucleotide sequence