Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ttdR and plsY are separated by 12 nucleotides plsY and folB are separated by 105 nucleotides folB and bacA are separated by 90 nucleotides
JDDGAC_22325: ttdR - DNA-binding transcriptional activator TtdR, at 4,272,185 to 4,273,117
ttdR
JDDGAC_22330: plsY - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 4,273,130 to 4,273,747
plsY
JDDGAC_22335: folB - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 4,273,853 to 4,274,221
folB
JDDGAC_22340: bacA - undecaprenyl-diphosphate phosphatase, at 4,274,312 to 4,275,133
bacA
Position (kb) 4273
4274 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 4272.228 kb on + strand at 4272.549 kb on - strand, within ttdR at 4272.611 kb on - strand, within ttdR at 4272.688 kb on - strand, within ttdR at 4272.707 kb on + strand, within ttdR at 4272.747 kb on + strand, within ttdR at 4272.907 kb on + strand, within ttdR at 4272.967 kb on - strand, within ttdR at 4272.967 kb on - strand, within ttdR at 4272.977 kb on + strand, within ttdR at 4272.977 kb on + strand, within ttdR at 4272.978 kb on - strand, within ttdR at 4273.039 kb on - strand at 4273.039 kb on - strand at 4273.039 kb on - strand at 4273.104 kb on - strand at 4273.115 kb on + strand at 4273.116 kb on - strand at 4273.287 kb on + strand, within plsY at 4273.344 kb on - strand, within plsY at 4273.344 kb on - strand, within plsY at 4273.344 kb on - strand, within plsY at 4273.442 kb on - strand, within plsY at 4273.493 kb on + strand, within plsY at 4273.521 kb on - strand, within plsY at 4273.601 kb on + strand, within plsY at 4273.601 kb on + strand, within plsY at 4273.602 kb on - strand, within plsY at 4273.602 kb on - strand, within plsY at 4273.602 kb on - strand, within plsY at 4273.602 kb on - strand, within plsY at 4273.603 kb on + strand, within plsY at 4273.604 kb on - strand, within plsY at 4273.604 kb on - strand, within plsY at 4273.615 kb on + strand, within plsY at 4273.747 kb on + strand at 4273.747 kb on + strand at 4273.747 kb on + strand at 4273.748 kb on - strand at 4274.219 kb on + strand at 4274.249 kb on + strand at 4274.261 kb on - strand at 4274.269 kb on - strand at 4274.307 kb on + strand at 4274.401 kb on + strand, within bacA at 4274.402 kb on - strand, within bacA at 4274.473 kb on - strand, within bacA at 4274.493 kb on + strand, within bacA at 4274.493 kb on + strand, within bacA at 4274.494 kb on - strand, within bacA at 4274.681 kb on + strand, within bacA at 4274.682 kb on - strand, within bacA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 4,272,228 + +0.4 4,272,549 - ttdR JDDGAC_22325 0.39 +0.8 4,272,611 - ttdR JDDGAC_22325 0.46 +0.7 4,272,688 - ttdR JDDGAC_22325 0.54 -1.1 4,272,707 + ttdR JDDGAC_22325 0.56 +2.9 4,272,747 + ttdR JDDGAC_22325 0.60 +1.3 4,272,907 + ttdR JDDGAC_22325 0.77 -0.3 4,272,967 - ttdR JDDGAC_22325 0.84 +1.6 4,272,967 - ttdR JDDGAC_22325 0.84 -0.9 4,272,977 + ttdR JDDGAC_22325 0.85 -0.4 4,272,977 + ttdR JDDGAC_22325 0.85 -2.4 4,272,978 - ttdR JDDGAC_22325 0.85 +0.5 4,273,039 - +1.3 4,273,039 - +0.5 4,273,039 - -1.1 4,273,104 - -0.3 4,273,115 + -1.8 4,273,116 - +0.5 4,273,287 + plsY JDDGAC_22330 0.25 -0.7 4,273,344 - plsY JDDGAC_22330 0.35 +1.0 4,273,344 - plsY JDDGAC_22330 0.35 -1.5 4,273,344 - plsY JDDGAC_22330 0.35 +1.0 4,273,442 - plsY JDDGAC_22330 0.50 +0.8 4,273,493 + plsY JDDGAC_22330 0.59 +0.5 4,273,521 - plsY JDDGAC_22330 0.63 +0.1 4,273,601 + plsY JDDGAC_22330 0.76 +1.4 4,273,601 + plsY JDDGAC_22330 0.76 +1.0 4,273,602 - plsY JDDGAC_22330 0.76 -0.5 4,273,602 - plsY JDDGAC_22330 0.76 +0.9 4,273,602 - plsY JDDGAC_22330 0.76 -0.4 4,273,602 - plsY JDDGAC_22330 0.76 +0.3 4,273,603 + plsY JDDGAC_22330 0.77 +0.6 4,273,604 - plsY JDDGAC_22330 0.77 -0.4 4,273,604 - plsY JDDGAC_22330 0.77 +0.3 4,273,615 + plsY JDDGAC_22330 0.78 +1.0 4,273,747 + -0.7 4,273,747 + +2.2 4,273,747 + -0.3 4,273,748 - -0.3 4,274,219 + +1.3 4,274,249 + -4.3 4,274,261 - -3.2 4,274,269 - -6.9 4,274,307 + -1.2 4,274,401 + bacA JDDGAC_22340 0.11 -3.4 4,274,402 - bacA JDDGAC_22340 0.11 -2.3 4,274,473 - bacA JDDGAC_22340 0.20 -0.9 4,274,493 + bacA JDDGAC_22340 0.22 -4.8 4,274,493 + bacA JDDGAC_22340 0.22 -3.7 4,274,494 - bacA JDDGAC_22340 0.22 -2.9 4,274,681 + bacA JDDGAC_22340 0.45 -2.0 4,274,682 - bacA JDDGAC_22340 0.45 -0.7
Or see this region's nucleotide sequence