Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mlaE and mlaD are separated by 4 nucleotides mlaD and mlaC are separated by 18 nucleotides mlaC and mlaC overlap by 1 nucleotides mlaC and ibaG are separated by 144 nucleotides ibaG and murA are separated by 54 nucleotides
JDDGAC_21605: mlaE - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 4,136,482 to 4,137,264
mlaE
JDDGAC_21610: mlaD - outer membrane lipid asymmetry maintenance protein MlaD, at 4,137,269 to 4,137,820
mlaD
JDDGAC_21615: mlaC - phospholipid-binding protein MlaC, at 4,137,839 to 4,138,474
mlaC
JDDGAC_21620: mlaC - phospholipid-binding protein MlaC, at 4,138,474 to 4,138,767
mlaC
JDDGAC_21625: ibaG - BolA family iron metabolism protein IbaG, at 4,138,912 to 4,139,181
ibaG
JDDGAC_21630: murA - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,139,236 to 4,140,495
murA
Position (kb) 4137
4138
4139 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4137.070 kb on - strand, within mlaE at 4137.093 kb on + strand, within mlaE at 4137.301 kb on + strand at 4137.302 kb on - strand at 4137.312 kb on + strand at 4137.369 kb on + strand, within mlaD at 4137.369 kb on + strand, within mlaD at 4137.370 kb on - strand, within mlaD at 4137.370 kb on - strand, within mlaD at 4137.370 kb on - strand, within mlaD at 4137.370 kb on - strand, within mlaD at 4137.370 kb on - strand, within mlaD at 4137.373 kb on + strand, within mlaD at 4137.373 kb on + strand, within mlaD at 4137.481 kb on + strand, within mlaD at 4137.482 kb on - strand, within mlaD at 4137.536 kb on + strand, within mlaD at 4137.536 kb on + strand, within mlaD at 4137.536 kb on + strand, within mlaD at 4137.536 kb on + strand, within mlaD at 4137.537 kb on - strand, within mlaD at 4137.537 kb on - strand, within mlaD at 4137.538 kb on + strand, within mlaD at 4137.538 kb on + strand, within mlaD at 4137.538 kb on + strand, within mlaD at 4137.539 kb on - strand, within mlaD at 4137.545 kb on - strand, within mlaD at 4137.574 kb on + strand, within mlaD at 4137.574 kb on + strand, within mlaD at 4137.574 kb on + strand, within mlaD at 4137.574 kb on + strand, within mlaD at 4137.575 kb on - strand, within mlaD at 4137.575 kb on - strand, within mlaD at 4137.599 kb on + strand, within mlaD at 4137.599 kb on + strand, within mlaD at 4137.609 kb on + strand, within mlaD at 4137.609 kb on + strand, within mlaD at 4137.646 kb on + strand, within mlaD at 4137.646 kb on + strand, within mlaD at 4137.647 kb on - strand, within mlaD at 4137.664 kb on + strand, within mlaD at 4137.665 kb on - strand, within mlaD at 4137.723 kb on - strand, within mlaD at 4137.730 kb on + strand, within mlaD at 4137.746 kb on - strand, within mlaD at 4137.746 kb on - strand, within mlaD at 4137.751 kb on + strand, within mlaD at 4137.752 kb on - strand, within mlaD at 4137.781 kb on + strand at 4137.782 kb on - strand at 4137.784 kb on + strand at 4137.920 kb on + strand, within mlaC at 4137.921 kb on - strand, within mlaC at 4137.923 kb on - strand, within mlaC at 4137.923 kb on - strand, within mlaC at 4137.923 kb on - strand, within mlaC at 4137.923 kb on - strand, within mlaC at 4138.010 kb on - strand, within mlaC at 4138.037 kb on + strand, within mlaC at 4138.038 kb on - strand, within mlaC at 4138.082 kb on + strand, within mlaC at 4138.082 kb on + strand, within mlaC at 4138.083 kb on - strand, within mlaC at 4138.116 kb on - strand, within mlaC at 4138.172 kb on + strand, within mlaC at 4138.173 kb on - strand, within mlaC at 4138.173 kb on - strand, within mlaC at 4138.220 kb on - strand, within mlaC at 4138.328 kb on + strand, within mlaC at 4138.328 kb on + strand, within mlaC at 4138.328 kb on + strand, within mlaC at 4138.328 kb on + strand, within mlaC at 4138.328 kb on + strand, within mlaC at 4138.329 kb on - strand, within mlaC at 4138.354 kb on + strand, within mlaC at 4138.354 kb on + strand, within mlaC at 4138.392 kb on + strand, within mlaC at 4138.393 kb on - strand, within mlaC at 4138.393 kb on - strand, within mlaC at 4138.396 kb on + strand, within mlaC at 4138.396 kb on + strand, within mlaC at 4138.397 kb on - strand, within mlaC at 4138.605 kb on + strand, within mlaC at 4138.606 kb on - strand, within mlaC at 4138.627 kb on - strand, within mlaC at 4138.717 kb on + strand, within mlaC at 4138.717 kb on + strand, within mlaC at 4138.718 kb on - strand, within mlaC at 4138.718 kb on - strand, within mlaC at 4138.737 kb on + strand, within mlaC at 4138.738 kb on - strand at 4138.860 kb on + strand at 4138.860 kb on + strand at 4138.861 kb on - strand at 4139.092 kb on + strand, within ibaG at 4139.092 kb on + strand, within ibaG at 4139.094 kb on + strand, within ibaG at 4139.094 kb on + strand, within ibaG at 4139.134 kb on + strand, within ibaG at 4139.134 kb on + strand, within ibaG at 4139.134 kb on + strand, within ibaG at 4139.134 kb on + strand, within ibaG
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 4,137,070 - mlaE JDDGAC_21605 0.75 -3.0 4,137,093 + mlaE JDDGAC_21605 0.78 -3.4 4,137,301 + -3.6 4,137,302 - -2.9 4,137,312 + -3.3 4,137,369 + mlaD JDDGAC_21610 0.18 -3.1 4,137,369 + mlaD JDDGAC_21610 0.18 -1.3 4,137,370 - mlaD JDDGAC_21610 0.18 -3.1 4,137,370 - mlaD JDDGAC_21610 0.18 -3.6 4,137,370 - mlaD JDDGAC_21610 0.18 -1.5 4,137,370 - mlaD JDDGAC_21610 0.18 -0.6 4,137,370 - mlaD JDDGAC_21610 0.18 -1.0 4,137,373 + mlaD JDDGAC_21610 0.19 -2.3 4,137,373 + mlaD JDDGAC_21610 0.19 -2.5 4,137,481 + mlaD JDDGAC_21610 0.38 -2.4 4,137,482 - mlaD JDDGAC_21610 0.39 -1.9 4,137,536 + mlaD JDDGAC_21610 0.48 -4.0 4,137,536 + mlaD JDDGAC_21610 0.48 -1.4 4,137,536 + mlaD JDDGAC_21610 0.48 -3.6 4,137,536 + mlaD JDDGAC_21610 0.48 -2.3 4,137,537 - mlaD JDDGAC_21610 0.49 -1.1 4,137,537 - mlaD JDDGAC_21610 0.49 -1.3 4,137,538 + mlaD JDDGAC_21610 0.49 -3.5 4,137,538 + mlaD JDDGAC_21610 0.49 -1.3 4,137,538 + mlaD JDDGAC_21610 0.49 -2.0 4,137,539 - mlaD JDDGAC_21610 0.49 -2.0 4,137,545 - mlaD JDDGAC_21610 0.50 -3.1 4,137,574 + mlaD JDDGAC_21610 0.55 -2.5 4,137,574 + mlaD JDDGAC_21610 0.55 -3.2 4,137,574 + mlaD JDDGAC_21610 0.55 -0.3 4,137,574 + mlaD JDDGAC_21610 0.55 -4.3 4,137,575 - mlaD JDDGAC_21610 0.55 -1.9 4,137,575 - mlaD JDDGAC_21610 0.55 +1.0 4,137,599 + mlaD JDDGAC_21610 0.60 -2.1 4,137,599 + mlaD JDDGAC_21610 0.60 -3.7 4,137,609 + mlaD JDDGAC_21610 0.62 -1.5 4,137,609 + mlaD JDDGAC_21610 0.62 -3.4 4,137,646 + mlaD JDDGAC_21610 0.68 -3.8 4,137,646 + mlaD JDDGAC_21610 0.68 -0.8 4,137,647 - mlaD JDDGAC_21610 0.68 -2.5 4,137,664 + mlaD JDDGAC_21610 0.72 -2.3 4,137,665 - mlaD JDDGAC_21610 0.72 -0.3 4,137,723 - mlaD JDDGAC_21610 0.82 -2.1 4,137,730 + mlaD JDDGAC_21610 0.84 -2.1 4,137,746 - mlaD JDDGAC_21610 0.86 -3.9 4,137,746 - mlaD JDDGAC_21610 0.86 -1.2 4,137,751 + mlaD JDDGAC_21610 0.87 -0.8 4,137,752 - mlaD JDDGAC_21610 0.88 -1.2 4,137,781 + -1.7 4,137,782 - -3.0 4,137,784 + -2.9 4,137,920 + mlaC JDDGAC_21615 0.13 -2.3 4,137,921 - mlaC JDDGAC_21615 0.13 -2.3 4,137,923 - mlaC JDDGAC_21615 0.13 -4.5 4,137,923 - mlaC JDDGAC_21615 0.13 -3.7 4,137,923 - mlaC JDDGAC_21615 0.13 -3.7 4,137,923 - mlaC JDDGAC_21615 0.13 -2.9 4,138,010 - mlaC JDDGAC_21615 0.27 +0.2 4,138,037 + mlaC JDDGAC_21615 0.31 -3.0 4,138,038 - mlaC JDDGAC_21615 0.31 -3.2 4,138,082 + mlaC JDDGAC_21615 0.38 -0.8 4,138,082 + mlaC JDDGAC_21615 0.38 -2.0 4,138,083 - mlaC JDDGAC_21615 0.38 -3.1 4,138,116 - mlaC JDDGAC_21615 0.44 +0.7 4,138,172 + mlaC JDDGAC_21615 0.52 -2.5 4,138,173 - mlaC JDDGAC_21615 0.53 -1.0 4,138,173 - mlaC JDDGAC_21615 0.53 -2.1 4,138,220 - mlaC JDDGAC_21615 0.60 -4.1 4,138,328 + mlaC JDDGAC_21615 0.77 -3.2 4,138,328 + mlaC JDDGAC_21615 0.77 -1.1 4,138,328 + mlaC JDDGAC_21615 0.77 -1.3 4,138,328 + mlaC JDDGAC_21615 0.77 -3.1 4,138,328 + mlaC JDDGAC_21615 0.77 -2.7 4,138,329 - mlaC JDDGAC_21615 0.77 -4.1 4,138,354 + mlaC JDDGAC_21615 0.81 -2.9 4,138,354 + mlaC JDDGAC_21615 0.81 -4.1 4,138,392 + mlaC JDDGAC_21615 0.87 -1.9 4,138,393 - mlaC JDDGAC_21615 0.87 -0.7 4,138,393 - mlaC JDDGAC_21615 0.87 -3.3 4,138,396 + mlaC JDDGAC_21615 0.88 +0.2 4,138,396 + mlaC JDDGAC_21615 0.88 -2.6 4,138,397 - mlaC JDDGAC_21615 0.88 -2.1 4,138,605 + mlaC JDDGAC_21620 0.45 -0.1 4,138,606 - mlaC JDDGAC_21620 0.45 -4.2 4,138,627 - mlaC JDDGAC_21620 0.52 -1.5 4,138,717 + mlaC JDDGAC_21620 0.83 -0.8 4,138,717 + mlaC JDDGAC_21620 0.83 -3.3 4,138,718 - mlaC JDDGAC_21620 0.83 -1.8 4,138,718 - mlaC JDDGAC_21620 0.83 -0.5 4,138,737 + mlaC JDDGAC_21620 0.89 -0.6 4,138,738 - -0.7 4,138,860 + -1.2 4,138,860 + +0.3 4,138,861 - +1.7 4,139,092 + ibaG JDDGAC_21625 0.67 +0.3 4,139,092 + ibaG JDDGAC_21625 0.67 +0.8 4,139,094 + ibaG JDDGAC_21625 0.67 +1.0 4,139,094 + ibaG JDDGAC_21625 0.67 +1.5 4,139,134 + ibaG JDDGAC_21625 0.82 +0.5 4,139,134 + ibaG JDDGAC_21625 0.82 -0.1 4,139,134 + ibaG JDDGAC_21625 0.82 -1.3 4,139,134 + ibaG JDDGAC_21625 0.82 -0.8
Or see this region's nucleotide sequence