Strain Fitness in Escherichia coli ECRC98 around JDDGAC_15630

Experiment: WM_EV240

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_EV240
2,941,286	+				+1.0
2,941,331	+				-2.1
2,941,358	+				-0.2
2,941,358	+				-0.2
2,941,392	+				-2.2
2,941,518	+	chpB	JDDGAC_15620	0.48	+0.6
2,941,530	-	chpB	JDDGAC_15620	0.51	-1.9
2,941,714	-				-1.2
2,941,718	+				-2.7
2,941,891	+	chpS	JDDGAC_15625	0.71	-1.0
2,941,891	+	chpS	JDDGAC_15625	0.71	-0.6
2,941,892	-	chpS	JDDGAC_15625	0.71	-2.0
2,941,892	-	chpS	JDDGAC_15625	0.71	-3.9
2,941,924	+	chpS	JDDGAC_15625	0.84	-0.1
2,941,925	-	chpS	JDDGAC_15625	0.85	+0.3
2,941,925	-	chpS	JDDGAC_15625	0.85	+1.9
2,941,950	-				-0.2
2,941,954	+				+0.7
2,941,955	-				+1.4
2,941,957	+				-1.8
2,941,957	+				-0.6
2,941,957	+				-0.3
2,942,064	+				+0.2
2,942,064	+				+0.2
2,942,064	+				+1.3
2,942,065	-				-2.0
2,942,065	-				+0.0
2,942,065	-				+0.8
2,942,110	+				-0.1
2,942,164	+				-0.0
2,942,171	-				+0.5
2,942,171	-				-0.9
2,942,176	+				+0.5
2,942,176	+				+0.8
2,942,176	+				+0.2
2,942,177	-				+1.6
2,942,177	-				+1.6
2,942,177	-				-1.1
2,942,177	-				+0.6
2,942,177	-				+1.1
2,942,180	+				+0.2
2,942,180	+				+1.9
2,942,180	+				-2.8
2,942,181	-				+1.0
2,942,181	-				-1.5
2,942,181	-				+0.0
2,942,191	-				+0.6
2,942,245	+	ytfP	JDDGAC_15630	0.20	+0.7
2,942,245	+	ytfP	JDDGAC_15630	0.20	+0.2
2,942,246	-	ytfP	JDDGAC_15630	0.21	-1.5
2,942,246	-	ytfP	JDDGAC_15630	0.21	-0.6
2,942,246	-	ytfP	JDDGAC_15630	0.21	+0.1
2,942,365	-	ytfP	JDDGAC_15630	0.56	+1.2
2,942,395	+	ytfP	JDDGAC_15630	0.64	-0.2
2,942,410	+	ytfP	JDDGAC_15630	0.69	+0.0
2,942,410	+	ytfP	JDDGAC_15630	0.69	+0.4
2,942,411	-	ytfP	JDDGAC_15630	0.69	-2.4
2,942,419	+	ytfP	JDDGAC_15630	0.71	+0.4
2,942,424	-	ytfP	JDDGAC_15630	0.73	+0.5
2,942,424	-	ytfP	JDDGAC_15630	0.73	+0.1
2,942,424	-	ytfP	JDDGAC_15630	0.73	+1.1
2,942,509	-				+0.0
2,942,521	-				+1.4
2,942,535	+				+2.3
2,942,582	+				+1.1
2,942,582	+				+0.1
2,942,582	+				+1.0
2,942,583	-				+1.9
2,942,583	-				+1.9
2,942,583	-				+0.8
2,942,583	-				+0.3
2,942,583	-				+1.5
2,942,583	-				+2.8
2,942,587	+				+2.3
2,942,588	-				+1.1
2,942,588	-				-0.1
2,942,588	-				+1.1
2,942,606	+				+1.1
2,942,606	+				-0.2
2,942,607	-				-0.5
2,942,634	-				+0.3
2,942,635	+				-2.9
2,942,669	+				-0.7
2,942,669	+				+1.6
2,942,669	+				+1.2
2,942,669	+				-0.9
2,942,669	+				+1.1
2,942,670	-				+0.8
2,942,670	-				-1.5
2,942,670	-				-0.2
2,942,726	+				+1.5
2,942,762	+				+1.9
2,942,763	-				-0.3
2,942,855	+				+1.6
2,942,855	+				-2.0
2,942,855	+				+1.3
2,942,856	-				+1.6
2,942,862	+				-0.5
2,942,862	+				+1.3
2,942,862	+				+0.6
2,942,955	-	tamB	JDDGAC_15635	0.12	-0.2
2,942,968	+	tamB	JDDGAC_15635	0.12	+0.3
2,942,986	+	tamB	JDDGAC_15635	0.12	+1.6
2,942,996	-	tamB	JDDGAC_15635	0.13	+1.6
2,942,996	-	tamB	JDDGAC_15635	0.13	+1.1
2,943,004	-	tamB	JDDGAC_15635	0.13	-0.3
2,943,032	+	tamB	JDDGAC_15635	0.14	+1.0
2,943,032	+	tamB	JDDGAC_15635	0.14	+0.3
2,943,032	+	tamB	JDDGAC_15635	0.14	-0.8
2,943,043	+	tamB	JDDGAC_15635	0.14	-0.4
2,943,066	+	tamB	JDDGAC_15635	0.14	+1.1
2,943,066	+	tamB	JDDGAC_15635	0.14	-1.9
2,943,066	+	tamB	JDDGAC_15635	0.14	+1.3
2,943,067	-	tamB	JDDGAC_15635	0.14	+2.8
2,943,140	-	tamB	JDDGAC_15635	0.16	-0.7
2,943,214	+	tamB	JDDGAC_15635	0.18	-1.7
2,943,221	-	tamB	JDDGAC_15635	0.19	+0.9
2,943,296	+	tamB	JDDGAC_15635	0.21	+0.4
2,943,390	-	tamB	JDDGAC_15635	0.23	+0.5
2,943,404	+	tamB	JDDGAC_15635	0.23	+0.6
2,943,405	-	tamB	JDDGAC_15635	0.23	+1.1
2,943,416	+	tamB	JDDGAC_15635	0.24	-0.7
2,943,514	-	tamB	JDDGAC_15635	0.26	+0.3