Strain Fitness in Escherichia coli ECRC98 around JDDGAC_15580

Experiment: WM_EV240

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_EV240
2,932,297	+	pmbA	JDDGAC_15565	0.89	-0.4
2,932,309	-	pmbA	JDDGAC_15565	0.89	-0.0
2,932,309	-	pmbA	JDDGAC_15565	0.89	-2.2
2,932,314	-	pmbA	JDDGAC_15565	0.90	-1.4
2,932,431	+				+0.6
2,932,432	-				-3.7
2,932,451	+				-1.3
2,932,452	-				-1.2
2,932,456	+				+0.9
2,932,456	+				-1.5
2,932,457	-				-0.7
2,932,519	+				-0.3
2,932,519	+				-0.4
2,932,520	-				+1.0
2,932,550	+				+1.8
2,932,550	+				+2.7
2,932,551	-				+0.9
2,932,629	-	yjgA	JDDGAC_15570	0.15	+2.6
2,932,629	-	yjgA	JDDGAC_15570	0.15	+0.8
2,932,640	+	yjgA	JDDGAC_15570	0.17	+2.4
2,932,764	-	yjgA	JDDGAC_15570	0.40	+3.1
2,932,764	-	yjgA	JDDGAC_15570	0.40	+2.4
2,932,764	-	yjgA	JDDGAC_15570	0.40	+2.2
2,932,802	+	yjgA	JDDGAC_15570	0.47	+3.1
2,932,802	+	yjgA	JDDGAC_15570	0.47	+1.9
2,932,826	-	yjgA	JDDGAC_15570	0.51	+2.4
2,932,826	-	yjgA	JDDGAC_15570	0.51	+1.2
2,932,951	+	yjgA	JDDGAC_15570	0.74	+2.6
2,932,954	+	yjgA	JDDGAC_15570	0.74	+0.2
2,932,954	+	yjgA	JDDGAC_15570	0.74	+1.9
2,932,954	+	yjgA	JDDGAC_15570	0.74	+1.8
2,932,991	+	yjgA	JDDGAC_15570	0.81	+1.3
2,932,991	+	yjgA	JDDGAC_15570	0.81	+3.2
2,933,153	-				-0.2
2,933,181	+				+0.0
2,933,182	-				-0.3
2,933,233	-				+0.4
2,933,253	+				+0.6
2,933,254	-				+0.7
2,933,339	-				+2.5
2,933,371	+				+2.2
2,933,371	+				+0.9
2,933,371	+				+1.9
2,933,372	-				+2.2
2,933,372	-				+1.6
2,933,372	-				+0.1
2,933,372	-				-0.4
2,933,383	+				+1.2
2,933,383	+				+1.4
2,933,492	+	mpl	JDDGAC_15580	0.17	+2.1
2,933,492	+	mpl	JDDGAC_15580	0.17	+2.2
2,933,493	-	mpl	JDDGAC_15580	0.18	+1.3
2,933,493	-	mpl	JDDGAC_15580	0.18	+2.3
2,933,563	+	mpl	JDDGAC_15580	0.23	-0.5
2,933,646	+	mpl	JDDGAC_15580	0.29	-1.1
2,933,646	+	mpl	JDDGAC_15580	0.29	+2.6
2,933,647	-	mpl	JDDGAC_15580	0.29	+1.8
2,933,648	+	mpl	JDDGAC_15580	0.29	-0.3
2,933,648	+	mpl	JDDGAC_15580	0.29	+1.2
2,933,648	+	mpl	JDDGAC_15580	0.29	-0.7
2,933,648	+	mpl	JDDGAC_15580	0.29	+1.0
2,933,649	-	mpl	JDDGAC_15580	0.29	+1.2
2,933,649	-	mpl	JDDGAC_15580	0.29	+2.6
2,933,649	-	mpl	JDDGAC_15580	0.29	+1.2
2,933,699	-	mpl	JDDGAC_15580	0.33	+1.7
2,933,701	+	mpl	JDDGAC_15580	0.33	+1.5
2,933,785	+	mpl	JDDGAC_15580	0.39	+2.1
2,933,785	+	mpl	JDDGAC_15580	0.39	+2.2
2,933,786	-	mpl	JDDGAC_15580	0.39	+0.4
2,933,786	-	mpl	JDDGAC_15580	0.39	-0.7
2,933,789	-	mpl	JDDGAC_15580	0.39	+2.3
2,933,789	-	mpl	JDDGAC_15580	0.39	+1.0
2,933,975	-	mpl	JDDGAC_15580	0.53	+0.6
2,933,977	+	mpl	JDDGAC_15580	0.53	-0.0
2,934,089	-	mpl	JDDGAC_15580	0.61	+1.5
2,934,089	-	mpl	JDDGAC_15580	0.61	+0.9
2,934,141	+	mpl	JDDGAC_15580	0.65	+0.8
2,934,142	-	mpl	JDDGAC_15580	0.65	+1.9
2,934,361	+	mpl	JDDGAC_15580	0.81	+2.6
2,934,362	-	mpl	JDDGAC_15580	0.81	+0.8
2,934,362	-	mpl	JDDGAC_15580	0.81	+1.0
2,934,362	-	mpl	JDDGAC_15580	0.81	+1.5
2,934,362	-	mpl	JDDGAC_15580	0.81	+2.6
2,934,362	-	mpl	JDDGAC_15580	0.81	+1.6
2,934,362	-	mpl	JDDGAC_15580	0.81	+2.0
2,934,362	-	mpl	JDDGAC_15580	0.81	+0.4
2,934,363	+	mpl	JDDGAC_15580	0.81	+1.2
2,934,363	+	mpl	JDDGAC_15580	0.81	+1.8
2,934,363	+	mpl	JDDGAC_15580	0.81	+2.5
2,934,363	+	mpl	JDDGAC_15580	0.81	+1.1
2,934,364	-	mpl	JDDGAC_15580	0.81	+0.5
2,934,364	-	mpl	JDDGAC_15580	0.81	+2.9
2,934,364	-	mpl	JDDGAC_15580	0.81	+0.1
2,934,364	-	mpl	JDDGAC_15580	0.81	+2.0
2,934,427	+	mpl	JDDGAC_15580	0.86	+0.9
2,934,428	-	mpl	JDDGAC_15580	0.86	+1.7
2,934,546	-				+0.2
2,934,557	+				-1.4
2,934,558	-				+1.8
2,934,558	-				+2.7
2,934,590	-				+2.2
2,934,613	+				+1.1
2,934,633	+				+2.0
2,934,666	+				+0.9
2,934,666	+				+0.6
2,934,666	+				+1.0
2,934,667	-				+1.1
2,934,667	-				+0.3
2,934,667	-				+0.3
2,934,745	+				-1.1
2,934,746	-				+0.9
2,934,752	+				-0.3
2,934,779	+				-2.5
2,934,821	+				-1.8
2,934,887	-				-1.7
2,935,113	+	fbp	JDDGAC_15585	0.31	-3.2
2,935,114	-	fbp	JDDGAC_15585	0.31	-2.4
2,935,114	-	fbp	JDDGAC_15585	0.31	-4.1
2,935,273	-	fbp	JDDGAC_15585	0.47	-3.5
2,935,279	+	fbp	JDDGAC_15585	0.48	-1.0
2,935,281	+	fbp	JDDGAC_15585	0.48	-4.6
2,935,281	+	fbp	JDDGAC_15585	0.48	-0.8
2,935,282	-	fbp	JDDGAC_15585	0.48	-2.7
2,935,335	-	fbp	JDDGAC_15585	0.53	-3.5
2,935,339	-	fbp	JDDGAC_15585	0.54	-2.6
2,935,429	-	fbp	JDDGAC_15585	0.63	-1.2
2,935,433	+	fbp	JDDGAC_15585	0.63	-3.6
2,935,434	-	fbp	JDDGAC_15585	0.63	-0.7
2,935,434	-	fbp	JDDGAC_15585	0.63	-1.1
2,935,434	-	fbp	JDDGAC_15585	0.63	-2.4
2,935,458	+	fbp	JDDGAC_15585	0.66	-2.6
2,935,459	-	fbp	JDDGAC_15585	0.66	-1.5
2,935,459	-	fbp	JDDGAC_15585	0.66	-3.6
2,935,463	+	fbp	JDDGAC_15585	0.66	-1.8
2,935,484	+	fbp	JDDGAC_15585	0.68	-1.5
2,935,484	+	fbp	JDDGAC_15585	0.68	-1.3
2,935,485	-	fbp	JDDGAC_15585	0.68	-2.2
2,935,504	-	fbp	JDDGAC_15585	0.70	-3.4
2,935,515	+	fbp	JDDGAC_15585	0.71	-0.6
2,935,515	+	fbp	JDDGAC_15585	0.71	-5.1
2,935,516	-	fbp	JDDGAC_15585	0.72	-3.9
2,935,518	-	fbp	JDDGAC_15585	0.72	-1.4
2,935,553	-	fbp	JDDGAC_15585	0.75	-4.1
2,935,570	-	fbp	JDDGAC_15585	0.77	-3.2
2,935,570	-	fbp	JDDGAC_15585	0.77	+0.2