Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10490

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttolQ and ybgC overlap by 4 nucleotidesybgC and ybgE are separated by 149 nucleotidesybgE and cydX overlap by 1 nucleotidescydX and cydB are separated by 14 nucleotides JDDGAC_10475: tolQ - Tol-Pal system protein TolQ, at 1,864,993 to 1,865,685 tolQ JDDGAC_10480: ybgC - tol-pal system-associated acyl-CoA thioesterase, at 1,865,682 to 1,866,086 ybgC JDDGAC_10485: ybgE - cyd operon protein YbgE, at 1,866,236 to 1,866,529 ybgE JDDGAC_10490: cydX - cytochrome bd-I oxidase subunit CydX, at 1,866,529 to 1,866,642 cydX JDDGAC_10495: cydB - cytochrome d ubiquinol oxidase subunit II, at 1,866,657 to 1,867,796 cydB Position (kb) 1866 1867Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1865.802 kb on - strand, within ybgCat 1865.842 kb on - strand, within ybgCat 1865.854 kb on - strand, within ybgCat 1865.907 kb on - strand, within ybgCat 1865.907 kb on - strand, within ybgCat 1866.004 kb on + strand, within ybgCat 1866.005 kb on - strand, within ybgCat 1866.046 kb on + strandat 1866.046 kb on + strandat 1866.047 kb on - strandat 1866.047 kb on - strandat 1866.049 kb on + strandat 1866.080 kb on + strandat 1866.081 kb on - strandat 1866.090 kb on - strandat 1866.133 kb on + strandat 1866.137 kb on - strandat 1866.138 kb on + strandat 1866.436 kb on + strand, within ybgEat 1866.505 kb on - strandat 1866.505 kb on - strandat 1866.523 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,865,802 - ybgC JDDGAC_10480 0.30 +0.2
1,865,842 - ybgC JDDGAC_10480 0.40 +0.8
1,865,854 - ybgC JDDGAC_10480 0.42 +0.6
1,865,907 - ybgC JDDGAC_10480 0.56 +0.2
1,865,907 - ybgC JDDGAC_10480 0.56 +0.7
1,866,004 + ybgC JDDGAC_10480 0.80 +1.6
1,866,005 - ybgC JDDGAC_10480 0.80 -1.8
1,866,046 + +0.2
1,866,046 + +2.3
1,866,047 - +0.3
1,866,047 - -2.4
1,866,049 + -0.3
1,866,080 + +2.8
1,866,081 - +0.0
1,866,090 - -0.5
1,866,133 + +3.0
1,866,137 - +1.2
1,866,138 + +1.8
1,866,436 + ybgE JDDGAC_10485 0.68 -0.0
1,866,505 - -0.5
1,866,505 - -1.1
1,866,523 + +0.7

Or see this region's nucleotide sequence