Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06355

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybcY and JDDGAC_06355 are separated by 497 nucleotidesJDDGAC_06355 and yciE are separated by 78 nucleotidesyciE and yciE are separated by 36 nucleotides JDDGAC_06350: ybcY - Putative uncharacterized protein YbcY, at 1,110,205 to 1,110,873 ybcY JDDGAC_06355: JDDGAC_06355 - stress-induced acidophilic repeat motif-containing protein, at 1,111,371 to 1,111,553 _06355 JDDGAC_06360: yciE - Protein YciF, at 1,111,632 to 1,112,132 yciE JDDGAC_06365: yciE - Protein YciE, at 1,112,169 to 1,112,675 yciE Position (kb) 1111 1112Strain fitness (log2 ratio) -2 -1 0 1at 1110.404 kb on - strand, within ybcYat 1110.416 kb on + strand, within ybcYat 1110.460 kb on - strand, within ybcYat 1110.606 kb on + strand, within ybcYat 1110.609 kb on - strand, within ybcYat 1110.629 kb on + strand, within ybcYat 1110.973 kb on - strandat 1110.996 kb on - strandat 1111.173 kb on + strandat 1111.259 kb on + strandat 1111.259 kb on + strandat 1112.066 kb on + strand, within yciEat 1112.138 kb on - strandat 1112.345 kb on - strand, within yciEat 1112.538 kb on - strand, within yciEat 1112.538 kb on - strand, within yciE

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,110,404 - ybcY JDDGAC_06350 0.30 +1.0
1,110,416 + ybcY JDDGAC_06350 0.32 -1.2
1,110,460 - ybcY JDDGAC_06350 0.38 +0.4
1,110,606 + ybcY JDDGAC_06350 0.60 +0.5
1,110,609 - ybcY JDDGAC_06350 0.60 +0.4
1,110,629 + ybcY JDDGAC_06350 0.63 -1.8
1,110,973 - -1.1
1,110,996 - +0.5
1,111,173 + +1.3
1,111,259 + +0.7
1,111,259 + +1.5
1,112,066 + yciE JDDGAC_06360 0.87 -0.8
1,112,138 - -0.3
1,112,345 - yciE JDDGAC_06365 0.35 +0.6
1,112,538 - yciE JDDGAC_06365 0.73 +1.5
1,112,538 - yciE JDDGAC_06365 0.73 -2.7

Or see this region's nucleotide sequence