Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycjY and JDDGAC_04820 overlap by 1 nucleotides JDDGAC_04820 and frsA overlap by 40 nucleotides frsA and wcaG are separated by 20 nucleotides wcaG and JDDGAC_04835 are separated by 290 nucleotides
JDDGAC_04815: ycjY - Uncharacterized protein YcjY, at 836,702 to 837,622
ycjY
JDDGAC_04820: JDDGAC_04820 - Peptidase-S15 domain-containing protein, at 837,622 to 838,002
_04820
JDDGAC_04825: frsA - alpha/beta hydrolase, at 837,963 to 838,553
frsA
JDDGAC_04830: wcaG - NAD-dependent dehydratase, at 838,574 to 839,212
wcaG
JDDGAC_04835: JDDGAC_04835 - Murein peptide amidase A, at 839,503 to 840,231
_04835
Position (kb) 837
838
839 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 837.015 kb on - strand, within ycjY at 837.066 kb on - strand, within ycjY at 837.067 kb on + strand, within ycjY at 837.242 kb on + strand, within ycjY at 837.317 kb on + strand, within ycjY at 837.389 kb on - strand, within ycjY at 837.392 kb on + strand, within ycjY at 837.401 kb on + strand, within ycjY at 837.488 kb on + strand, within ycjY at 837.569 kb on + strand at 837.594 kb on + strand at 837.594 kb on + strand at 837.646 kb on - strand at 837.723 kb on + strand, within JDDGAC_04820 at 837.750 kb on + strand, within JDDGAC_04820 at 837.817 kb on + strand, within JDDGAC_04820 at 838.016 kb on + strand at 838.034 kb on + strand, within frsA at 838.034 kb on + strand, within frsA at 838.239 kb on - strand, within frsA at 838.363 kb on + strand, within frsA at 838.416 kb on + strand, within frsA at 838.628 kb on - strand at 838.709 kb on - strand, within wcaG at 838.734 kb on + strand, within wcaG at 838.810 kb on - strand, within wcaG at 839.038 kb on + strand, within wcaG at 839.115 kb on + strand, within wcaG at 839.120 kb on - strand, within wcaG at 839.161 kb on + strand at 839.269 kb on - strand at 839.271 kb on + strand at 839.337 kb on + strand at 839.337 kb on + strand at 839.338 kb on - strand at 839.348 kb on - strand at 839.480 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 837,015 - ycjY JDDGAC_04815 0.34 -0.8 837,066 - ycjY JDDGAC_04815 0.40 -0.8 837,067 + ycjY JDDGAC_04815 0.40 -0.4 837,242 + ycjY JDDGAC_04815 0.59 +0.9 837,317 + ycjY JDDGAC_04815 0.67 +0.8 837,389 - ycjY JDDGAC_04815 0.75 +1.5 837,392 + ycjY JDDGAC_04815 0.75 -1.2 837,401 + ycjY JDDGAC_04815 0.76 +0.7 837,488 + ycjY JDDGAC_04815 0.85 -0.7 837,569 + +0.3 837,594 + -0.9 837,594 + -0.6 837,646 - -2.2 837,723 + JDDGAC_04820 0.27 +1.4 837,750 + JDDGAC_04820 0.34 -2.9 837,817 + JDDGAC_04820 0.51 +1.1 838,016 + -1.4 838,034 + frsA JDDGAC_04825 0.12 +0.4 838,034 + frsA JDDGAC_04825 0.12 -0.2 838,239 - frsA JDDGAC_04825 0.47 +2.1 838,363 + frsA JDDGAC_04825 0.68 +1.8 838,416 + frsA JDDGAC_04825 0.77 +2.3 838,628 - +1.6 838,709 - wcaG JDDGAC_04830 0.21 -3.5 838,734 + wcaG JDDGAC_04830 0.25 +0.7 838,810 - wcaG JDDGAC_04830 0.37 +1.0 839,038 + wcaG JDDGAC_04830 0.73 +1.0 839,115 + wcaG JDDGAC_04830 0.85 -0.5 839,120 - wcaG JDDGAC_04830 0.85 +0.7 839,161 + +0.9 839,269 - +1.0 839,271 + -1.5 839,337 + -1.2 839,337 + -0.8 839,338 - +0.6 839,348 - +2.7 839,480 + +0.5
Or see this region's nucleotide sequence