Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04240

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynbC and ynbB are separated by 15 nucleotidesynbB and ynbA overlap by 1 nucleotidesynbA and ydbD are separated by 170 nucleotides JDDGAC_04235: ynbC - Uncharacterized protein YnbC, at 742,502 to 744,259 ynbC JDDGAC_04240: ynbB - Uncharacterized protein YnbB, at 744,275 to 745,171 ynbB JDDGAC_04245: ynbA - Inner membrane protein YnbA, at 745,171 to 745,776 ynbA JDDGAC_04250: ydbD - Uncharacterized protein YdbD, at 745,947 to 748,253 ydbD Position (kb) 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 743.288 kb on - strand, within ynbCat 743.525 kb on + strand, within ynbCat 743.569 kb on - strand, within ynbCat 743.751 kb on + strand, within ynbCat 744.020 kb on - strand, within ynbCat 744.107 kb on - strandat 744.208 kb on + strandat 744.209 kb on - strandat 744.420 kb on - strand, within ynbBat 744.420 kb on - strand, within ynbBat 744.845 kb on - strand, within ynbBat 745.058 kb on - strand, within ynbBat 745.067 kb on - strand, within ynbBat 745.492 kb on - strand, within ynbAat 745.656 kb on + strand, within ynbAat 745.710 kb on + strand, within ynbAat 745.759 kb on + strandat 746.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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743,288 - ynbC JDDGAC_04235 0.45 -1.6
743,525 + ynbC JDDGAC_04235 0.58 -1.5
743,569 - ynbC JDDGAC_04235 0.61 -1.1
743,751 + ynbC JDDGAC_04235 0.71 +0.3
744,020 - ynbC JDDGAC_04235 0.86 -0.0
744,107 - +0.4
744,208 + -3.7
744,209 - +1.2
744,420 - ynbB JDDGAC_04240 0.16 -0.0
744,420 - ynbB JDDGAC_04240 0.16 -0.2
744,845 - ynbB JDDGAC_04240 0.64 -0.4
745,058 - ynbB JDDGAC_04240 0.87 +0.3
745,067 - ynbB JDDGAC_04240 0.88 -2.4
745,492 - ynbA JDDGAC_04245 0.53 +3.0
745,656 + ynbA JDDGAC_04245 0.80 -0.5
745,710 + ynbA JDDGAC_04245 0.89 -1.9
745,759 + +1.7
746,089 - -0.4

Or see this region's nucleotide sequence