Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napA and napG are separated by 6 nucleotides napG and napH overlap by 14 nucleotides napH and napH overlap by 4 nucleotides napH and napC are separated by 9 nucleotides
JDDGAC_27215: napA - nitrate reductase catalytic subunit NapA, at 5,224,652 to 5,227,138
napA
JDDGAC_27220: napG - ferredoxin-type protein NapG, at 5,227,145 to 5,227,840
napG
JDDGAC_27225: napH - quinol dehydrogenase ferredoxin subunit NapH, at 5,227,827 to 5,228,690
napH
JDDGAC_27230: napH - quinol dehydrogenase ferredoxin subunit NapH, at 5,228,687 to 5,229,136
napH
JDDGAC_27235: napC - cytochrome c-type protein NapC, at 5,229,146 to 5,229,748
napC
Position (kb) 5227
5228
5229 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5226.839 kb on - strand, within napA at 5226.892 kb on + strand at 5227.136 kb on + strand at 5227.137 kb on - strand at 5227.137 kb on - strand at 5227.145 kb on - strand at 5227.145 kb on - strand at 5227.145 kb on - strand at 5227.362 kb on - strand, within napG at 5227.362 kb on - strand, within napG at 5227.415 kb on + strand, within napG at 5227.789 kb on - strand at 5227.907 kb on - strand at 5227.986 kb on + strand, within napH at 5227.987 kb on - strand, within napH at 5227.987 kb on - strand, within napH at 5227.987 kb on - strand, within napH at 5227.987 kb on - strand, within napH at 5227.988 kb on + strand, within napH at 5227.988 kb on + strand, within napH at 5228.002 kb on + strand, within napH at 5228.135 kb on - strand, within napH at 5228.176 kb on + strand, within napH at 5228.279 kb on - strand, within napH at 5228.338 kb on + strand, within napH at 5228.366 kb on + strand, within napH at 5228.392 kb on + strand, within napH at 5228.392 kb on + strand, within napH at 5228.393 kb on - strand, within napH at 5228.551 kb on + strand, within napH at 5228.648 kb on - strand at 5228.648 kb on - strand at 5228.652 kb on - strand at 5228.657 kb on - strand at 5228.657 kb on - strand at 5228.657 kb on - strand at 5228.660 kb on + strand at 5228.660 kb on + strand at 5228.661 kb on - strand at 5228.661 kb on - strand at 5228.661 kb on - strand at 5228.748 kb on + strand, within napH at 5228.864 kb on + strand, within napH at 5228.893 kb on + strand, within napH at 5228.961 kb on - strand, within napH at 5228.961 kb on - strand, within napH at 5228.992 kb on + strand, within napH at 5229.048 kb on - strand, within napH at 5229.109 kb on + strand at 5229.110 kb on - strand at 5229.135 kb on - strand at 5229.145 kb on + strand at 5229.319 kb on + strand, within napC at 5229.320 kb on - strand, within napC at 5229.320 kb on - strand, within napC at 5229.320 kb on - strand, within napC at 5229.356 kb on + strand, within napC at 5229.356 kb on + strand, within napC at 5229.357 kb on - strand, within napC at 5229.357 kb on - strand, within napC at 5229.374 kb on + strand, within napC at 5229.374 kb on + strand, within napC at 5229.466 kb on + strand, within napC at 5229.589 kb on + strand, within napC at 5229.608 kb on + strand, within napC at 5229.608 kb on + strand, within napC at 5229.609 kb on - strand, within napC at 5229.610 kb on + strand, within napC at 5229.610 kb on + strand, within napC at 5229.611 kb on - strand, within napC at 5229.616 kb on + strand, within napC at 5229.617 kb on - strand, within napC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 5,226,839 - napA JDDGAC_27215 0.88 +0.5 5,226,892 + -0.0 5,227,136 + -0.1 5,227,137 - +1.0 5,227,137 - -1.6 5,227,145 - -0.2 5,227,145 - -3.1 5,227,145 - -0.8 5,227,362 - napG JDDGAC_27220 0.31 -2.3 5,227,362 - napG JDDGAC_27220 0.31 -0.2 5,227,415 + napG JDDGAC_27220 0.39 -1.7 5,227,789 - -3.2 5,227,907 - +0.7 5,227,986 + napH JDDGAC_27225 0.18 +1.0 5,227,987 - napH JDDGAC_27225 0.19 -1.5 5,227,987 - napH JDDGAC_27225 0.19 +0.6 5,227,987 - napH JDDGAC_27225 0.19 +0.9 5,227,987 - napH JDDGAC_27225 0.19 -0.9 5,227,988 + napH JDDGAC_27225 0.19 -2.5 5,227,988 + napH JDDGAC_27225 0.19 -1.7 5,228,002 + napH JDDGAC_27225 0.20 +0.8 5,228,135 - napH JDDGAC_27225 0.36 +0.4 5,228,176 + napH JDDGAC_27225 0.40 -1.9 5,228,279 - napH JDDGAC_27225 0.52 -0.1 5,228,338 + napH JDDGAC_27225 0.59 +1.1 5,228,366 + napH JDDGAC_27225 0.62 -1.5 5,228,392 + napH JDDGAC_27225 0.65 -0.4 5,228,392 + napH JDDGAC_27225 0.65 -0.5 5,228,393 - napH JDDGAC_27225 0.66 +0.0 5,228,551 + napH JDDGAC_27225 0.84 +1.9 5,228,648 - +0.5 5,228,648 - -0.3 5,228,652 - -0.6 5,228,657 - -0.3 5,228,657 - -3.9 5,228,657 - -0.9 5,228,660 + -1.5 5,228,660 + +0.2 5,228,661 - +0.8 5,228,661 - -1.6 5,228,661 - -0.9 5,228,748 + napH JDDGAC_27230 0.14 +1.8 5,228,864 + napH JDDGAC_27230 0.39 +3.1 5,228,893 + napH JDDGAC_27230 0.46 +1.9 5,228,961 - napH JDDGAC_27230 0.61 +1.4 5,228,961 - napH JDDGAC_27230 0.61 +1.6 5,228,992 + napH JDDGAC_27230 0.68 +0.2 5,229,048 - napH JDDGAC_27230 0.80 +1.2 5,229,109 + +0.2 5,229,110 - +0.5 5,229,135 - -0.7 5,229,145 + +0.6 5,229,319 + napC JDDGAC_27235 0.29 -2.8 5,229,320 - napC JDDGAC_27235 0.29 -0.1 5,229,320 - napC JDDGAC_27235 0.29 +1.5 5,229,320 - napC JDDGAC_27235 0.29 +0.8 5,229,356 + napC JDDGAC_27235 0.35 +0.2 5,229,356 + napC JDDGAC_27235 0.35 -0.4 5,229,357 - napC JDDGAC_27235 0.35 +0.5 5,229,357 - napC JDDGAC_27235 0.35 -0.9 5,229,374 + napC JDDGAC_27235 0.38 +0.1 5,229,374 + napC JDDGAC_27235 0.38 -0.6 5,229,466 + napC JDDGAC_27235 0.53 +0.3 5,229,589 + napC JDDGAC_27235 0.73 +1.3 5,229,608 + napC JDDGAC_27235 0.77 -0.5 5,229,608 + napC JDDGAC_27235 0.77 -1.1 5,229,609 - napC JDDGAC_27235 0.77 +2.5 5,229,610 + napC JDDGAC_27235 0.77 +0.4 5,229,610 + napC JDDGAC_27235 0.77 -0.7 5,229,611 - napC JDDGAC_27235 0.77 -1.0 5,229,616 + napC JDDGAC_27235 0.78 +0.3 5,229,617 - napC JDDGAC_27235 0.78 +1.0
Or see this region's nucleotide sequence