Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lrhA and JDDGAC_26800 are separated by 203 nucleotides JDDGAC_26800 and nuoA are separated by 262 nucleotides nuoA and nuoB are separated by 15 nucleotides nuoB and nuoC are separated by 93 nucleotides
JDDGAC_26795: lrhA - transcriptional regulator LrhA, at 5,129,459 to 5,130,397
lrhA
JDDGAC_26800: JDDGAC_26800 - hypothetical protein, at 5,130,601 to 5,130,765
_26800
JDDGAC_26805: nuoA - NADH-quinone oxidoreductase subunit NuoA, at 5,131,028 to 5,131,471
nuoA
JDDGAC_26810: nuoB - NADH-quinone oxidoreductase subunit NuoB, at 5,131,487 to 5,132,149
nuoB
JDDGAC_26815: nuoC - NADH-quinone oxidoreductase subunit C/D, at 5,132,243 to 5,134,045
nuoC
Position (kb) 5131
5132 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5130.028 kb on - strand, within lrhA at 5130.028 kb on - strand, within lrhA at 5130.080 kb on - strand, within lrhA at 5130.080 kb on - strand, within lrhA at 5130.088 kb on + strand, within lrhA at 5130.107 kb on + strand, within lrhA at 5130.108 kb on - strand, within lrhA at 5130.217 kb on - strand, within lrhA at 5130.261 kb on - strand, within lrhA at 5130.277 kb on + strand, within lrhA at 5130.299 kb on + strand, within lrhA at 5130.300 kb on - strand, within lrhA at 5130.318 kb on - strand at 5130.318 kb on - strand at 5130.322 kb on + strand at 5130.335 kb on + strand at 5130.336 kb on - strand at 5130.410 kb on - strand at 5130.566 kb on + strand at 5130.592 kb on - strand at 5130.672 kb on + strand, within JDDGAC_26800 at 5130.673 kb on - strand, within JDDGAC_26800 at 5130.767 kb on + strand at 5130.768 kb on - strand at 5130.768 kb on - strand at 5130.768 kb on - strand at 5130.768 kb on - strand at 5130.809 kb on + strand at 5130.809 kb on + strand at 5130.810 kb on - strand at 5130.914 kb on + strand at 5131.023 kb on - strand at 5131.034 kb on - strand at 5131.079 kb on - strand, within nuoA at 5131.278 kb on - strand, within nuoA at 5131.278 kb on - strand, within nuoA at 5131.320 kb on + strand, within nuoA at 5131.430 kb on - strand at 5131.430 kb on - strand at 5131.430 kb on - strand at 5131.484 kb on - strand at 5131.495 kb on + strand at 5131.495 kb on + strand at 5131.510 kb on - strand at 5131.657 kb on + strand, within nuoB at 5131.658 kb on - strand, within nuoB at 5131.740 kb on + strand, within nuoB at 5131.888 kb on + strand, within nuoB at 5131.892 kb on + strand, within nuoB at 5131.892 kb on + strand, within nuoB at 5131.892 kb on + strand, within nuoB at 5131.946 kb on + strand, within nuoB at 5131.946 kb on + strand, within nuoB at 5131.946 kb on + strand, within nuoB at 5131.947 kb on - strand, within nuoB at 5131.947 kb on - strand, within nuoB at 5131.980 kb on - strand, within nuoB at 5132.063 kb on + strand, within nuoB at 5132.131 kb on + strand at 5132.132 kb on - strand at 5132.132 kb on - strand at 5132.254 kb on + strand at 5132.254 kb on + strand at 5132.265 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 5,130,028 - lrhA JDDGAC_26795 0.61 +1.7 5,130,028 - lrhA JDDGAC_26795 0.61 -2.6 5,130,080 - lrhA JDDGAC_26795 0.66 -1.6 5,130,080 - lrhA JDDGAC_26795 0.66 +1.7 5,130,088 + lrhA JDDGAC_26795 0.67 +0.4 5,130,107 + lrhA JDDGAC_26795 0.69 -2.3 5,130,108 - lrhA JDDGAC_26795 0.69 +1.3 5,130,217 - lrhA JDDGAC_26795 0.81 +0.2 5,130,261 - lrhA JDDGAC_26795 0.85 +1.4 5,130,277 + lrhA JDDGAC_26795 0.87 +0.2 5,130,299 + lrhA JDDGAC_26795 0.89 +0.8 5,130,300 - lrhA JDDGAC_26795 0.90 +0.5 5,130,318 - -0.1 5,130,318 - -0.2 5,130,322 + -2.5 5,130,335 + -1.5 5,130,336 - +0.6 5,130,410 - +1.6 5,130,566 + -0.9 5,130,592 - +0.2 5,130,672 + JDDGAC_26800 0.43 +3.1 5,130,673 - JDDGAC_26800 0.44 +1.6 5,130,767 + -1.2 5,130,768 - -0.9 5,130,768 - -2.1 5,130,768 - -1.3 5,130,768 - +0.9 5,130,809 + -0.0 5,130,809 + -0.7 5,130,810 - +1.3 5,130,914 + -1.0 5,131,023 - -0.9 5,131,034 - -0.7 5,131,079 - nuoA JDDGAC_26805 0.11 -0.3 5,131,278 - nuoA JDDGAC_26805 0.56 -1.3 5,131,278 - nuoA JDDGAC_26805 0.56 +0.4 5,131,320 + nuoA JDDGAC_26805 0.66 -2.6 5,131,430 - -0.2 5,131,430 - +2.2 5,131,430 - -0.0 5,131,484 - -1.2 5,131,495 + -1.5 5,131,495 + -1.2 5,131,510 - -1.4 5,131,657 + nuoB JDDGAC_26810 0.26 -1.4 5,131,658 - nuoB JDDGAC_26810 0.26 -2.4 5,131,740 + nuoB JDDGAC_26810 0.38 +1.5 5,131,888 + nuoB JDDGAC_26810 0.60 +1.3 5,131,892 + nuoB JDDGAC_26810 0.61 +1.1 5,131,892 + nuoB JDDGAC_26810 0.61 -1.9 5,131,892 + nuoB JDDGAC_26810 0.61 -2.3 5,131,946 + nuoB JDDGAC_26810 0.69 -2.1 5,131,946 + nuoB JDDGAC_26810 0.69 +0.4 5,131,946 + nuoB JDDGAC_26810 0.69 -0.3 5,131,947 - nuoB JDDGAC_26810 0.69 +1.1 5,131,947 - nuoB JDDGAC_26810 0.69 -0.8 5,131,980 - nuoB JDDGAC_26810 0.74 -0.3 5,132,063 + nuoB JDDGAC_26810 0.87 +3.0 5,132,131 + +2.6 5,132,132 - -1.4 5,132,132 - +0.5 5,132,254 + +0.1 5,132,254 + -1.2 5,132,265 + -0.7
Or see this region's nucleotide sequence