Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16435

Experiment: WM_EV240

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_EV240
3,098,565	-				-0.2
3,098,565	-				+1.5
3,098,585	+				-1.0
3,098,616	+				+0.0
3,098,619	+				-1.8
3,098,620	-				+1.3
3,098,620	-				-1.0
3,098,620	-				+1.0
3,098,620	-				-0.1
3,098,620	-				+0.6
3,098,684	-	nrfG	JDDGAC_16425	0.17	-0.2
3,098,684	-	nrfG	JDDGAC_16425	0.17	+0.3
3,098,716	-	nrfG	JDDGAC_16425	0.22	-0.6
3,098,808	+	nrfG	JDDGAC_16425	0.38	-2.5
3,098,808	+	nrfG	JDDGAC_16425	0.38	+0.2
3,098,809	-	nrfG	JDDGAC_16425	0.38	+0.2
3,098,809	-	nrfG	JDDGAC_16425	0.38	-0.1
3,098,809	-	nrfG	JDDGAC_16425	0.38	-1.6
3,098,809	-	nrfG	JDDGAC_16425	0.38	-1.5
3,098,809	-	nrfG	JDDGAC_16425	0.38	-0.9
3,098,828	+	nrfG	JDDGAC_16425	0.41	-1.4
3,098,829	-	nrfG	JDDGAC_16425	0.41	+0.5
3,098,852	+	nrfG	JDDGAC_16425	0.45	+0.5
3,098,875	+	nrfG	JDDGAC_16425	0.49	+1.3
3,098,875	+	nrfG	JDDGAC_16425	0.49	+1.1
3,098,876	-	nrfG	JDDGAC_16425	0.49	-1.7
3,098,876	-	nrfG	JDDGAC_16425	0.49	-1.6
3,098,876	-	nrfG	JDDGAC_16425	0.49	-1.3
3,098,915	+	nrfG	JDDGAC_16425	0.55	+1.2
3,098,933	+	nrfG	JDDGAC_16425	0.58	+0.2
3,098,933	+	nrfG	JDDGAC_16425	0.58	-0.1
3,098,933	+	nrfG	JDDGAC_16425	0.58	+0.4
3,098,934	-	nrfG	JDDGAC_16425	0.59	-0.7
3,098,934	-	nrfG	JDDGAC_16425	0.59	-0.3
3,098,934	-	nrfG	JDDGAC_16425	0.59	+0.7
3,098,934	-	nrfG	JDDGAC_16425	0.59	-0.8
3,098,934	-	nrfG	JDDGAC_16425	0.59	+0.1
3,098,934	-	nrfG	JDDGAC_16425	0.59	+1.3
3,099,066	-	nrfG	JDDGAC_16425	0.81	-1.1
3,099,077	-	nrfG	JDDGAC_16425	0.83	+0.6
3,099,077	-	nrfG	JDDGAC_16425	0.83	+0.5
3,099,222	+	nrfF	JDDGAC_16430	0.12	-0.1
3,099,222	+	nrfF	JDDGAC_16430	0.12	+0.3
3,099,222	+	nrfF	JDDGAC_16430	0.12	-1.1
3,099,223	-	nrfF	JDDGAC_16430	0.12	+0.2
3,099,223	-	nrfF	JDDGAC_16430	0.12	-0.9
3,099,280	+	nrfF	JDDGAC_16430	0.27	+1.1
3,099,281	-	nrfF	JDDGAC_16430	0.27	+1.8
3,099,281	-	nrfF	JDDGAC_16430	0.27	+1.5
3,099,358	+	nrfF	JDDGAC_16430	0.47	+1.7
3,099,359	-	nrfF	JDDGAC_16430	0.47	-1.0
3,099,375	-	nrfF	JDDGAC_16430	0.52	-0.1
3,099,435	+	nrfF	JDDGAC_16430	0.67	-1.5
3,099,435	+	nrfF	JDDGAC_16430	0.67	-3.9
3,099,435	+	nrfF	JDDGAC_16430	0.67	-0.2
3,099,436	-	nrfF	JDDGAC_16430	0.67	-0.6
3,099,436	-	nrfF	JDDGAC_16430	0.67	-0.9
3,099,453	+	nrfF	JDDGAC_16430	0.72	+1.7
3,099,499	-	nrfF	JDDGAC_16430	0.84	+0.5
3,099,525	-				+1.0
3,099,528	+				+0.3
3,099,529	-				+0.1
3,099,538	-				+0.3
3,099,538	-				-1.6
3,099,538	-				+0.4
3,099,556	+				+1.5
3,099,556	+				-1.5
3,099,557	-				+1.8
3,099,557	-				+0.0
3,099,646	+				+1.0
3,099,646	+				-1.5
3,099,647	-				-1.0
3,099,647	-				-1.6
3,099,647	-				+0.3
3,099,647	-				+2.6
3,099,650	+				-1.3
3,099,650	+				+1.1
3,099,651	-				-1.1
3,099,651	-				+1.1
3,099,651	-				-3.2
3,099,651	-				+0.9
3,099,651	-				-1.7
3,099,651	-				+1.3
3,099,702	-				-0.5
3,099,784	+	nrfF	JDDGAC_16435	0.14	-1.1
3,099,842	+	nrfF	JDDGAC_16435	0.18	+0.1
3,099,843	-	nrfF	JDDGAC_16435	0.18	+0.1
3,099,843	-	nrfF	JDDGAC_16435	0.18	-0.2
3,099,843	-	nrfF	JDDGAC_16435	0.18	-1.7
3,099,887	+	nrfF	JDDGAC_16435	0.21	+0.6
3,099,887	+	nrfF	JDDGAC_16435	0.21	-1.0
3,099,976	+	nrfF	JDDGAC_16435	0.26	-0.5
3,099,976	+	nrfF	JDDGAC_16435	0.26	+0.4
3,099,977	-	nrfF	JDDGAC_16435	0.26	+0.6
3,099,982	+	nrfF	JDDGAC_16435	0.26	-2.4
3,099,983	-	nrfF	JDDGAC_16435	0.26	+1.0
3,100,140	-	nrfF	JDDGAC_16435	0.36	+1.1
3,100,278	-	nrfF	JDDGAC_16435	0.45	+0.3
3,100,390	+	nrfF	JDDGAC_16435	0.52	-1.9
3,100,390	+	nrfF	JDDGAC_16435	0.52	+1.0
3,100,390	+	nrfF	JDDGAC_16435	0.52	+1.8
3,100,390	+	nrfF	JDDGAC_16435	0.52	-0.1
3,100,390	+	nrfF	JDDGAC_16435	0.52	-0.3
3,100,390	+	nrfF	JDDGAC_16435	0.52	-0.1
3,100,419	+	nrfF	JDDGAC_16435	0.53	+1.4
3,100,419	+	nrfF	JDDGAC_16435	0.53	-0.3
3,100,420	-	nrfF	JDDGAC_16435	0.53	+1.5
3,100,423	+	nrfF	JDDGAC_16435	0.54	-1.7
3,100,424	-	nrfF	JDDGAC_16435	0.54	-0.5
3,100,477	+	nrfF	JDDGAC_16435	0.57	-2.3
3,100,517	-	nrfF	JDDGAC_16435	0.59	+0.9
3,100,517	-	nrfF	JDDGAC_16435	0.59	-1.5
3,100,609	+	nrfF	JDDGAC_16435	0.65	+0.3
3,100,610	-	nrfF	JDDGAC_16435	0.65	-0.3
3,100,610	-	nrfF	JDDGAC_16435	0.65	-1.0
3,100,610	-	nrfF	JDDGAC_16435	0.65	+1.0
3,100,734	-	nrfF	JDDGAC_16435	0.73	-0.5
3,100,755	+	nrfF	JDDGAC_16435	0.74	+1.0
3,100,755	+	nrfF	JDDGAC_16435	0.74	+0.1
3,100,756	-	nrfF	JDDGAC_16435	0.74	+0.4
3,100,843	+	nrfF	JDDGAC_16435	0.79	-2.7
3,100,843	+	nrfF	JDDGAC_16435	0.79	-2.7
3,100,852	+	nrfF	JDDGAC_16435	0.80	+0.1
3,100,852	+	nrfF	JDDGAC_16435	0.80	+1.0
3,100,876	+	nrfF	JDDGAC_16435	0.82	+0.3
3,100,876	+	nrfF	JDDGAC_16435	0.82	-1.4
3,100,876	+	nrfF	JDDGAC_16435	0.82	-0.9
3,101,036	+				+0.3
3,101,036	+				-0.7
3,101,037	-				-0.5
3,101,037	-				-1.7
3,101,040	+				-0.2
3,101,041	-				+1.6
3,101,041	-				-1.2
3,101,055	-				+1.9
3,101,055	-				-0.2
3,101,055	-				-0.4
3,101,087	+				+0.7
3,101,087	+				-2.0
3,101,088	-				-1.0
3,101,227	+				-3.4
3,101,227	+				+1.9
3,101,263	+				-1.6
3,101,264	-				+3.4
3,101,574	-	nrfD	JDDGAC_16440	0.30	+0.2
3,101,598	-	nrfD	JDDGAC_16440	0.32	+0.6
3,101,717	-	nrfD	JDDGAC_16440	0.45	+1.3
3,101,719	+	nrfD	JDDGAC_16440	0.45	+0.4
3,101,720	-	nrfD	JDDGAC_16440	0.45	+0.6
3,101,761	+	nrfD	JDDGAC_16440	0.49	+1.3
3,101,762	-	nrfD	JDDGAC_16440	0.49	+3.3
3,101,763	+	nrfD	JDDGAC_16440	0.49	-1.5
3,101,937	+	nrfD	JDDGAC_16440	0.68	+1.1
3,101,937	+	nrfD	JDDGAC_16440	0.68	+0.5
3,101,937	+	nrfD	JDDGAC_16440	0.68	+0.7
3,101,937	+	nrfD	JDDGAC_16440	0.68	-1.6
3,101,937	+	nrfD	JDDGAC_16440	0.68	+0.0
3,101,938	-	nrfD	JDDGAC_16440	0.68	-0.5
3,101,938	-	nrfD	JDDGAC_16440	0.68	-2.5
3,101,938	-	nrfD	JDDGAC_16440	0.68	-2.7
3,102,135	-	nrfD	JDDGAC_16440	0.88	-1.5
3,102,170	-				+0.8