Strain Fitness in Escherichia coli ECRC98 around JDDGAC_15655

Experiment: WM_EV240

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_EV240
2,948,241	+				-2.7
2,948,242	-				+0.9
2,948,248	+				+0.4
2,948,291	-				-0.9
2,948,349	+	msrA	JDDGAC_15645	0.18	+1.1
2,948,350	-	msrA	JDDGAC_15645	0.18	+0.7
2,948,432	+	msrA	JDDGAC_15645	0.31	+0.3
2,948,432	+	msrA	JDDGAC_15645	0.31	-1.4
2,948,451	-	msrA	JDDGAC_15645	0.34	-0.8
2,948,462	+	msrA	JDDGAC_15645	0.36	+1.5
2,948,465	-	msrA	JDDGAC_15645	0.36	-0.2
2,948,465	-	msrA	JDDGAC_15645	0.36	-1.6
2,948,556	-	msrA	JDDGAC_15645	0.50	+0.8
2,948,556	-	msrA	JDDGAC_15645	0.50	+0.6
2,948,568	+	msrA	JDDGAC_15645	0.52	+0.8
2,948,568	+	msrA	JDDGAC_15645	0.52	-1.1
2,948,569	-	msrA	JDDGAC_15645	0.52	-0.6
2,948,575	-	msrA	JDDGAC_15645	0.53	-0.2
2,948,637	-	msrA	JDDGAC_15645	0.63	-1.8
2,948,774	+	msrA	JDDGAC_15645	0.85	+1.2
2,948,774	+	msrA	JDDGAC_15645	0.85	+2.2
2,948,774	+	msrA	JDDGAC_15645	0.85	+0.6
2,948,775	-	msrA	JDDGAC_15645	0.85	+0.9
2,948,775	-	msrA	JDDGAC_15645	0.85	-2.2
2,948,801	+	msrA	JDDGAC_15645	0.89	-1.5
2,948,890	+				+0.0
2,948,890	+				-3.0
2,948,975	-				+0.8
2,948,990	+				+0.6
2,949,047	+				+0.7
2,949,065	-				-1.0
2,949,069	+				-1.5
2,949,070	-				+1.5
2,949,074	+				-2.2
2,949,074	+				-1.8
2,949,074	+				-0.2
2,949,075	-				+0.2
2,949,075	-				+1.2
2,949,079	+				-1.9
2,949,085	-				+0.4
2,949,085	-				+1.3
2,949,085	-				-0.1
2,949,085	-				-0.5
2,949,134	-				-0.1
2,949,147	+				+0.7
2,949,190	-				-2.7
2,949,194	+				+0.4
2,949,194	+				-0.5
2,949,194	+				-0.3
2,949,195	-				+2.2
2,949,199	+				-1.2
2,949,200	-				-1.3
2,949,207	-				-0.4
2,949,212	-				+1.1
2,949,235	+				-1.8
2,949,236	-				-0.4
2,949,318	-				-0.1
2,949,318	-				+0.8
2,949,319	+				+0.6
2,949,319	+				-0.1
2,949,319	+				-0.8
2,949,319	+				-1.2
2,949,320	-				-1.0
2,949,320	-				-1.2
2,949,320	-				-0.5
2,949,341	+	paeA	JDDGAC_15655	0.11	-1.1
2,949,341	+	paeA	JDDGAC_15655	0.11	-2.4
2,949,465	+	paeA	JDDGAC_15655	0.20	-1.4
2,949,465	+	paeA	JDDGAC_15655	0.20	+0.5
2,949,466	-	paeA	JDDGAC_15655	0.20	+1.8
2,949,467	+	paeA	JDDGAC_15655	0.20	+2.0
2,949,468	-	paeA	JDDGAC_15655	0.20	+0.0
2,949,468	-	paeA	JDDGAC_15655	0.20	+0.8
2,949,468	-	paeA	JDDGAC_15655	0.20	+0.7
2,949,500	+	paeA	JDDGAC_15655	0.23	-1.4
2,949,533	+	paeA	JDDGAC_15655	0.25	-1.0
2,949,534	-	paeA	JDDGAC_15655	0.25	-1.1
2,949,600	-	paeA	JDDGAC_15655	0.30	-3.0
2,949,627	+	paeA	JDDGAC_15655	0.32	-1.2
2,949,628	-	paeA	JDDGAC_15655	0.32	+3.9
2,949,673	+	paeA	JDDGAC_15655	0.36	+1.8
2,949,703	+	paeA	JDDGAC_15655	0.38	+0.5
2,949,704	-	paeA	JDDGAC_15655	0.38	-1.0
2,949,707	+	paeA	JDDGAC_15655	0.38	+1.2
2,949,707	+	paeA	JDDGAC_15655	0.38	-2.4
2,949,707	+	paeA	JDDGAC_15655	0.38	+1.0
2,949,708	-	paeA	JDDGAC_15655	0.38	-3.6
2,949,736	-	paeA	JDDGAC_15655	0.40	+0.3
2,949,927	-	paeA	JDDGAC_15655	0.54	+0.4
2,949,950	+	paeA	JDDGAC_15655	0.56	+1.6
2,949,950	+	paeA	JDDGAC_15655	0.56	+0.3
2,949,951	-	paeA	JDDGAC_15655	0.56	+1.3
2,949,970	-	paeA	JDDGAC_15655	0.58	-2.4
2,949,970	-	paeA	JDDGAC_15655	0.58	+0.3
2,949,980	+	paeA	JDDGAC_15655	0.58	-3.0
2,949,981	-	paeA	JDDGAC_15655	0.58	-1.2
2,950,330	-	paeA	JDDGAC_15655	0.84	-1.7
2,950,330	-	paeA	JDDGAC_15655	0.84	+0.4
2,950,349	+	paeA	JDDGAC_15655	0.86	+0.4
2,950,358	+	paeA	JDDGAC_15655	0.87	+0.2
2,950,358	+	paeA	JDDGAC_15655	0.87	-0.6
2,950,433	+				+1.0
2,950,434	-				-1.1
2,950,434	-				-0.9
2,950,437	+				-0.5
2,950,437	+				-1.6
2,950,438	-				+1.6
2,950,438	-				+0.5
2,950,512	-				-0.5
2,950,512	-				+0.6
2,950,546	-				+1.6
2,950,579	+				+0.7
2,950,580	-				+2.2
2,950,580	-				-2.5
2,950,583	-				+0.3
2,950,590	-				+0.5
2,950,590	-				-2.9
2,950,599	+				-1.1
2,950,606	+				+0.5
2,950,606	+				-0.0
2,950,624	-				+1.4
2,950,624	-				-0.1
2,950,672	+	ytfK	JDDGAC_15660	0.18	+0.1
2,950,703	-	ytfK	JDDGAC_15660	0.33	-0.3
2,950,767	+	ytfK	JDDGAC_15660	0.64	+0.0
2,950,767	+	ytfK	JDDGAC_15660	0.64	-0.6
2,950,767	+	ytfK	JDDGAC_15660	0.64	-2.1
2,950,768	-	ytfK	JDDGAC_15660	0.65	+0.6
2,950,768	-	ytfK	JDDGAC_15660	0.65	-0.5
2,950,768	-	ytfK	JDDGAC_15660	0.65	-0.2
2,950,769	+	ytfK	JDDGAC_15660	0.65	-0.0
2,950,770	-	ytfK	JDDGAC_15660	0.66	+1.2
2,950,770	-	ytfK	JDDGAC_15660	0.66	-0.2
2,950,794	-	ytfK	JDDGAC_15660	0.77	+0.2
2,950,797	+	ytfK	JDDGAC_15660	0.79	+0.5
2,950,822	-				+0.3
2,950,844	+				-2.6
2,950,845	-				-0.8
2,950,845	-				-0.6
2,950,845	-				-0.1
2,950,858	+				-0.9
2,950,861	+				-1.1
2,950,861	+				-0.9
2,950,862	-				-0.3
2,950,862	-				-3.2
2,950,892	+				+0.6
2,950,912	-				-2.1
2,950,918	+				-0.0
2,950,919	-				+0.4
2,950,925	+				-0.7
2,950,927	+				-1.4
2,950,928	-				-0.9
2,950,956	+				-0.5
2,950,995	+				-4.6
2,951,025	+				-0.1
2,951,099	-				+0.9
2,951,099	-				+1.3
2,951,105	+				+0.8
2,951,105	+				-0.6
2,951,105	+				+0.7
2,951,106	-				-0.3
2,951,106	-				-0.9
2,951,150	+				-0.9
2,951,150	+				-2.4
2,951,305	+	ytfJ	JDDGAC_15665	0.25	+0.5
2,951,310	-	ytfJ	JDDGAC_15665	0.26	-0.4
2,951,310	-	ytfJ	JDDGAC_15665	0.26	+1.1
2,951,352	+	ytfJ	JDDGAC_15665	0.34	-1.5
2,951,353	-	ytfJ	JDDGAC_15665	0.34	+0.7
2,951,362	+	ytfJ	JDDGAC_15665	0.35	+0.2
2,951,363	-	ytfJ	JDDGAC_15665	0.36	-1.2
2,951,363	-	ytfJ	JDDGAC_15665	0.36	-1.0
2,951,524	+	ytfJ	JDDGAC_15665	0.65	-1.1
2,951,524	+	ytfJ	JDDGAC_15665	0.65	-1.4