Strain Fitness in Escherichia coli ECRC98 around JDDGAC_12310

Experiment: WM_EV240

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_EV240
2,266,320	-	yaiW	JDDGAC_12305	0.12	-1.0
2,266,357	+	yaiW	JDDGAC_12305	0.15	+0.1
2,266,358	-	yaiW	JDDGAC_12305	0.15	-0.3
2,266,398	+	yaiW	JDDGAC_12305	0.19	+0.3
2,266,481	+	yaiW	JDDGAC_12305	0.26	-0.9
2,266,481	+	yaiW	JDDGAC_12305	0.26	+0.6
2,266,574	-	yaiW	JDDGAC_12305	0.35	+1.2
2,266,606	-	yaiW	JDDGAC_12305	0.38	-2.0
2,266,618	+	yaiW	JDDGAC_12305	0.39	+0.1
2,266,618	+	yaiW	JDDGAC_12305	0.39	-1.4
2,266,646	-	yaiW	JDDGAC_12305	0.41	-0.9
2,266,646	-	yaiW	JDDGAC_12305	0.41	+0.2
2,266,649	+	yaiW	JDDGAC_12305	0.42	-4.7
2,266,649	+	yaiW	JDDGAC_12305	0.42	-0.2
2,266,649	+	yaiW	JDDGAC_12305	0.42	+1.1
2,266,650	-	yaiW	JDDGAC_12305	0.42	-1.8
2,266,728	-	yaiW	JDDGAC_12305	0.49	-0.2
2,266,926	-	yaiW	JDDGAC_12305	0.67	-0.5
2,266,926	-	yaiW	JDDGAC_12305	0.67	+0.7
2,267,023	+	yaiW	JDDGAC_12305	0.76	-1.6
2,267,181	+				-3.3
2,267,182	-				+2.0
2,267,226	-				+0.4
2,267,236	-				+0.0
2,267,289	+				-0.3
2,267,289	+				-2.4
2,267,290	-				+1.1
2,267,290	-				-3.3
2,267,290	-				-0.3
2,267,312	+				-2.1
2,267,320	-				-0.9
2,267,374	+				-0.5
2,267,378	+				+0.0
2,267,378	+				+0.1
2,267,379	-				-1.3
2,267,412	-				+2.8
2,267,412	-				-2.7
2,267,456	+	sbmA	JDDGAC_12310	0.13	-0.2
2,267,480	+	sbmA	JDDGAC_12310	0.15	-1.0
2,267,569	+	sbmA	JDDGAC_12310	0.22	-0.8
2,267,569	+	sbmA	JDDGAC_12310	0.22	-1.1
2,267,569	+	sbmA	JDDGAC_12310	0.22	-2.3
2,267,570	-	sbmA	JDDGAC_12310	0.22	+1.6
2,267,570	-	sbmA	JDDGAC_12310	0.22	+1.2
2,267,573	+	sbmA	JDDGAC_12310	0.22	-0.2
2,267,573	+	sbmA	JDDGAC_12310	0.22	+0.3
2,267,573	+	sbmA	JDDGAC_12310	0.22	-0.0
2,267,574	-	sbmA	JDDGAC_12310	0.22	-0.7
2,267,574	-	sbmA	JDDGAC_12310	0.22	-4.1
2,267,575	+	sbmA	JDDGAC_12310	0.22	-0.4
2,267,585	-	sbmA	JDDGAC_12310	0.23	-0.2
2,267,596	+	sbmA	JDDGAC_12310	0.24	+0.6
2,267,894	+	sbmA	JDDGAC_12310	0.49	+0.5
2,268,001	+	sbmA	JDDGAC_12310	0.57	+0.3
2,268,001	+	sbmA	JDDGAC_12310	0.57	+0.6
2,268,001	+	sbmA	JDDGAC_12310	0.57	-2.7
2,268,002	-	sbmA	JDDGAC_12310	0.57	-1.6
2,268,002	-	sbmA	JDDGAC_12310	0.57	-3.0
2,268,002	-	sbmA	JDDGAC_12310	0.57	-1.3
2,268,037	+	sbmA	JDDGAC_12310	0.60	-0.7
2,268,038	-	sbmA	JDDGAC_12310	0.60	+0.4
2,268,140	+	sbmA	JDDGAC_12310	0.69	-1.0
2,268,176	-	sbmA	JDDGAC_12310	0.72	+0.1
2,268,176	-	sbmA	JDDGAC_12310	0.72	-3.9
2,268,187	+	sbmA	JDDGAC_12310	0.73	-1.4
2,268,269	-	sbmA	JDDGAC_12310	0.79	+0.2
2,268,289	+	sbmA	JDDGAC_12310	0.81	+0.1
2,268,289	+	sbmA	JDDGAC_12310	0.81	+0.6
2,268,332	-	sbmA	JDDGAC_12310	0.84	-0.4
2,268,332	-	sbmA	JDDGAC_12310	0.84	-0.1
2,268,334	+	sbmA	JDDGAC_12310	0.85	-0.2
2,268,515	+				-2.3
2,268,515	+				+1.1
2,268,516	-				-2.3
2,268,516	-				-1.7
2,268,516	-				-0.2
2,268,516	-				+1.0
2,268,516	-				-0.2
2,268,521	+				-0.5
2,268,522	-				+0.7
2,268,522	-				-1.2
2,268,522	-				+0.5
2,268,535	-				+1.9
2,268,543	-				-1.5
2,268,564	+				-1.6
2,268,565	-				-1.5
2,268,623	-				+0.2
2,268,623	-				-2.6
2,268,634	+				+0.6
2,268,693	+				-0.2
2,268,694	-				-1.6
2,268,707	-				+1.8
2,268,761	+		JDDGAC_12315	0.34	-0.9
2,268,779	+		JDDGAC_12315	0.52	+1.2
2,268,779	+		JDDGAC_12315	0.52	-0.3
2,268,785	+		JDDGAC_12315	0.58	-0.2
2,268,785	+		JDDGAC_12315	0.58	-1.7
2,268,786	-		JDDGAC_12315	0.59	-1.3
2,268,788	+		JDDGAC_12315	0.61	-0.7
2,268,788	+		JDDGAC_12315	0.61	-1.4
2,268,788	+		JDDGAC_12315	0.61	-1.0
2,268,825	+				+0.8
2,268,829	-				-1.4
2,268,830	+				-3.6
2,268,831	-				-1.8
2,268,831	-				-2.5
2,268,831	-				-0.5
2,268,835	-				+0.9
2,268,835	-				-3.8
2,268,881	+				+1.5
2,268,881	+				-0.0
2,269,069	-	ampH	JDDGAC_12320	0.17	+0.8
2,269,144	+	ampH	JDDGAC_12320	0.23	-1.3
2,269,144	+	ampH	JDDGAC_12320	0.23	-0.2
2,269,145	-	ampH	JDDGAC_12320	0.23	-2.3
2,269,212	-	ampH	JDDGAC_12320	0.29	-0.4
2,269,215	+	ampH	JDDGAC_12320	0.30	+0.8
2,269,215	+	ampH	JDDGAC_12320	0.30	+0.7
2,269,216	-	ampH	JDDGAC_12320	0.30	+1.0
2,269,216	-	ampH	JDDGAC_12320	0.30	-0.5
2,269,216	-	ampH	JDDGAC_12320	0.30	-0.9
2,269,245	+	ampH	JDDGAC_12320	0.32	-2.5
2,269,245	+	ampH	JDDGAC_12320	0.32	+0.6
2,269,245	+	ampH	JDDGAC_12320	0.32	-2.9
2,269,245	+	ampH	JDDGAC_12320	0.32	+1.5
2,269,245	+	ampH	JDDGAC_12320	0.32	-1.8
2,269,371	+	ampH	JDDGAC_12320	0.43	-0.6
2,269,479	+	ampH	JDDGAC_12320	0.52	+1.3