Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11055

Experiment: WM_EV240

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_EV240
1,984,627	+				+1.7
1,984,627	+				+0.1
1,984,646	+				-2.1
1,984,647	-				+1.1
1,984,856	-	tatE	JDDGAC_11050	0.62	+0.3
1,984,856	-	tatE	JDDGAC_11050	0.62	+1.9
1,984,860	-	tatE	JDDGAC_11050	0.64	-1.6
1,984,919	-				-0.0
1,984,919	-				-0.0
1,984,922	-				+1.6
1,984,922	-				+0.3
1,984,933	+				+0.0
1,984,933	+				+1.5
1,984,933	+				-0.2
1,984,937	+				-2.9
1,984,950	+				+2.7
1,984,950	+				+2.6
1,984,951	-				-1.4
1,984,951	-				-0.3
1,984,951	-				+1.0
1,984,951	-				-1.5
1,984,952	+				+0.0
1,984,953	-				+1.2
1,984,953	-				+1.2
1,985,066	-				+1.6
1,985,066	-				+0.8
1,985,206	+	tatE	JDDGAC_11055	0.18	+0.9
1,985,259	+	tatE	JDDGAC_11055	0.25	+0.6
1,985,259	+	tatE	JDDGAC_11055	0.25	-1.0
1,985,260	-	tatE	JDDGAC_11055	0.25	-0.8
1,985,260	-	tatE	JDDGAC_11055	0.25	+0.1
1,985,261	+	tatE	JDDGAC_11055	0.25	+0.1
1,985,261	+	tatE	JDDGAC_11055	0.25	+0.4
1,985,261	+	tatE	JDDGAC_11055	0.25	+0.1
1,985,261	+	tatE	JDDGAC_11055	0.25	-1.0
1,985,261	+	tatE	JDDGAC_11055	0.25	-1.6
1,985,262	-	tatE	JDDGAC_11055	0.25	-0.7
1,985,262	-	tatE	JDDGAC_11055	0.25	+1.2
1,985,262	-	tatE	JDDGAC_11055	0.25	-1.4
1,985,401	+	tatE	JDDGAC_11055	0.43	+0.7
1,985,402	-	tatE	JDDGAC_11055	0.43	-5.0
1,985,409	-	tatE	JDDGAC_11055	0.44	-1.1
1,985,568	+	tatE	JDDGAC_11055	0.64	-2.6
1,985,569	-	tatE	JDDGAC_11055	0.64	-0.6
1,985,628	+	tatE	JDDGAC_11055	0.72	-2.4
1,985,695	+	tatE	JDDGAC_11055	0.80	+0.9
1,985,696	-	tatE	JDDGAC_11055	0.80	-0.3
1,985,820	+				-0.2
1,985,821	-				-1.4
1,985,908	+				+1.7
1,985,908	+				+0.6
1,985,928	+				+3.0
1,985,947	+				+0.4
1,985,947	+				-1.0
1,985,948	-				+0.1
1,986,020	+	crcB	JDDGAC_11060	0.20	+0.9
1,986,146	-	crcB	JDDGAC_11060	0.53	-2.7
1,986,172	+	crcB	JDDGAC_11060	0.60	+0.1
1,986,377	-				+1.7
1,986,441	-	cspE	JDDGAC_11065	0.29	-0.3
1,986,467	-	cspE	JDDGAC_11065	0.41	-0.3
1,986,467	-	cspE	JDDGAC_11065	0.41	-0.3
1,986,476	-	cspE	JDDGAC_11065	0.46	-0.9
1,986,498	-	cspE	JDDGAC_11065	0.56	+0.6
1,986,498	-	cspE	JDDGAC_11065	0.56	-0.3
1,986,566	-	cspE	JDDGAC_11065	0.89	-1.9
1,986,566	-	cspE	JDDGAC_11065	0.89	+0.5
1,986,566	-	cspE	JDDGAC_11065	0.89	+0.0
1,986,578	-				-1.4
1,986,603	-				-1.1
1,986,603	-				+0.1
1,986,603	-				-0.0
1,986,603	-				-1.4
1,986,681	-				+1.0
1,986,810	+				+1.9
1,986,810	+				-0.2
1,986,811	-				-2.4
1,986,825	+	pagP	JDDGAC_11070	0.11	-1.3
1,986,826	-	pagP	JDDGAC_11070	0.11	+0.2