Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10140

Experiment: WM_EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_10135 and JDDGAC_10140 overlap by 29 nucleotidesJDDGAC_10140 and JDDGAC_10145 are separated by 20 nucleotidesJDDGAC_10145 and yjdB are separated by 60 nucleotides JDDGAC_10135: JDDGAC_10135 - phage tail tape measure protein, at 1,809,401 to 1,812,058 _10135 JDDGAC_10140: JDDGAC_10140 - Minor tail protein T of prophage, at 1,812,030 to 1,812,347 _10140 JDDGAC_10145: JDDGAC_10145 - phage minor tail protein G, at 1,812,368 to 1,812,754 _10145 JDDGAC_10150: yjdB - phage tail protein, at 1,812,815 to 1,813,558 yjdB Position (kb) 1812 1813Strain fitness (log2 ratio) -2 -1 0 1at 1811.032 kb on + strand, within JDDGAC_10135at 1811.032 kb on + strand, within JDDGAC_10135at 1811.223 kb on - strand, within JDDGAC_10135at 1811.298 kb on - strand, within JDDGAC_10135at 1811.384 kb on - strand, within JDDGAC_10135at 1811.385 kb on + strand, within JDDGAC_10135at 1811.385 kb on + strand, within JDDGAC_10135at 1811.386 kb on - strand, within JDDGAC_10135at 1811.530 kb on + strand, within JDDGAC_10135at 1811.531 kb on - strand, within JDDGAC_10135at 1811.531 kb on - strand, within JDDGAC_10135at 1811.630 kb on - strand, within JDDGAC_10135at 1811.686 kb on - strand, within JDDGAC_10135at 1811.773 kb on + strand, within JDDGAC_10135at 1811.921 kb on - strandat 1812.005 kb on - strandat 1812.478 kb on - strand, within JDDGAC_10145at 1812.491 kb on - strand, within JDDGAC_10145at 1812.491 kb on - strand, within JDDGAC_10145at 1812.672 kb on + strand, within JDDGAC_10145at 1812.672 kb on + strand, within JDDGAC_10145at 1812.730 kb on + strandat 1812.731 kb on - strandat 1812.805 kb on + strandat 1812.806 kb on - strandat 1813.005 kb on - strand, within yjdBat 1813.005 kb on - strand, within yjdBat 1813.225 kb on - strand, within yjdBat 1813.232 kb on - strand, within yjdBat 1813.322 kb on - strand, within yjdB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
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1,811,032 + JDDGAC_10135 0.61 -2.3
1,811,032 + JDDGAC_10135 0.61 +0.7
1,811,223 - JDDGAC_10135 0.69 -0.8
1,811,298 - JDDGAC_10135 0.71 +1.5
1,811,384 - JDDGAC_10135 0.75 -0.4
1,811,385 + JDDGAC_10135 0.75 -0.3
1,811,385 + JDDGAC_10135 0.75 -0.1
1,811,386 - JDDGAC_10135 0.75 -0.9
1,811,530 + JDDGAC_10135 0.80 -2.4
1,811,531 - JDDGAC_10135 0.80 -0.8
1,811,531 - JDDGAC_10135 0.80 -0.1
1,811,630 - JDDGAC_10135 0.84 -0.7
1,811,686 - JDDGAC_10135 0.86 -0.5
1,811,773 + JDDGAC_10135 0.89 -0.1
1,811,921 - -1.1
1,812,005 - +0.6
1,812,478 - JDDGAC_10145 0.28 +1.5
1,812,491 - JDDGAC_10145 0.32 -0.1
1,812,491 - JDDGAC_10145 0.32 -0.7
1,812,672 + JDDGAC_10145 0.79 +0.4
1,812,672 + JDDGAC_10145 0.79 +0.2
1,812,730 + -1.7
1,812,731 - +0.3
1,812,805 + -2.5
1,812,806 - -1.8
1,813,005 - yjdB JDDGAC_10150 0.26 -0.6
1,813,005 - yjdB JDDGAC_10150 0.26 -1.4
1,813,225 - yjdB JDDGAC_10150 0.55 -0.3
1,813,232 - yjdB JDDGAC_10150 0.56 +0.5
1,813,322 - yjdB JDDGAC_10150 0.68 -2.3

Or see this region's nucleotide sequence