Experiment: WM_EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsA and cmk are separated by 110 nucleotides cmk and ycaL are separated by 172 nucleotides
JDDGAC_09080: rpsA - 30S ribosomal protein S1, at 1,600,829 to 1,602,502
rpsA
JDDGAC_09085: cmk - (d)CMP kinase, at 1,602,613 to 1,603,296
cmk
JDDGAC_09090: ycaL - metallopeptidase YcaL, at 1,603,469 to 1,604,233
ycaL
Position (kb) 1602
1603
1604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1603.346 kb on - strand at 1603.346 kb on - strand at 1603.400 kb on - strand at 1603.416 kb on - strand at 1603.426 kb on + strand at 1603.475 kb on - strand at 1603.671 kb on + strand, within ycaL at 1603.672 kb on - strand, within ycaL at 1603.779 kb on + strand, within ycaL at 1603.941 kb on + strand, within ycaL at 1603.942 kb on - strand, within ycaL at 1603.942 kb on - strand, within ycaL at 1603.942 kb on - strand, within ycaL at 1603.942 kb on - strand, within ycaL at 1603.942 kb on - strand, within ycaL at 1603.942 kb on - strand, within ycaL at 1603.942 kb on - strand, within ycaL at 1603.950 kb on + strand, within ycaL at 1603.950 kb on + strand, within ycaL at 1603.950 kb on + strand, within ycaL at 1603.950 kb on + strand, within ycaL at 1603.950 kb on + strand, within ycaL at 1603.951 kb on - strand, within ycaL at 1603.951 kb on - strand, within ycaL at 1603.951 kb on - strand, within ycaL at 1603.951 kb on - strand, within ycaL at 1603.969 kb on + strand, within ycaL at 1603.970 kb on - strand, within ycaL at 1603.972 kb on + strand, within ycaL at 1603.972 kb on + strand, within ycaL at 1603.973 kb on - strand, within ycaL at 1603.973 kb on - strand, within ycaL at 1603.973 kb on - strand, within ycaL at 1604.016 kb on + strand, within ycaL at 1604.017 kb on - strand, within ycaL at 1604.116 kb on + strand, within ycaL at 1604.116 kb on + strand, within ycaL at 1604.119 kb on - strand, within ycaL at 1604.147 kb on - strand, within ycaL at 1604.186 kb on + strand at 1604.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV240 remove 1,603,346 - +0.7 1,603,346 - +1.3 1,603,400 - +2.8 1,603,416 - -1.4 1,603,426 + +0.2 1,603,475 - +0.9 1,603,671 + ycaL JDDGAC_09090 0.26 -1.2 1,603,672 - ycaL JDDGAC_09090 0.27 +0.7 1,603,779 + ycaL JDDGAC_09090 0.41 -0.4 1,603,941 + ycaL JDDGAC_09090 0.62 +0.9 1,603,942 - ycaL JDDGAC_09090 0.62 +2.1 1,603,942 - ycaL JDDGAC_09090 0.62 -0.2 1,603,942 - ycaL JDDGAC_09090 0.62 -0.5 1,603,942 - ycaL JDDGAC_09090 0.62 -0.8 1,603,942 - ycaL JDDGAC_09090 0.62 -0.9 1,603,942 - ycaL JDDGAC_09090 0.62 -0.3 1,603,942 - ycaL JDDGAC_09090 0.62 -1.9 1,603,950 + ycaL JDDGAC_09090 0.63 -0.6 1,603,950 + ycaL JDDGAC_09090 0.63 +0.5 1,603,950 + ycaL JDDGAC_09090 0.63 -1.0 1,603,950 + ycaL JDDGAC_09090 0.63 -1.2 1,603,950 + ycaL JDDGAC_09090 0.63 -0.4 1,603,951 - ycaL JDDGAC_09090 0.63 +1.6 1,603,951 - ycaL JDDGAC_09090 0.63 +0.1 1,603,951 - ycaL JDDGAC_09090 0.63 -0.1 1,603,951 - ycaL JDDGAC_09090 0.63 -1.6 1,603,969 + ycaL JDDGAC_09090 0.65 +0.2 1,603,970 - ycaL JDDGAC_09090 0.65 +1.8 1,603,972 + ycaL JDDGAC_09090 0.66 +1.7 1,603,972 + ycaL JDDGAC_09090 0.66 +1.8 1,603,973 - ycaL JDDGAC_09090 0.66 -0.7 1,603,973 - ycaL JDDGAC_09090 0.66 -0.6 1,603,973 - ycaL JDDGAC_09090 0.66 +1.2 1,604,016 + ycaL JDDGAC_09090 0.72 -3.1 1,604,017 - ycaL JDDGAC_09090 0.72 -2.7 1,604,116 + ycaL JDDGAC_09090 0.85 +0.6 1,604,116 + ycaL JDDGAC_09090 0.85 -1.6 1,604,119 - ycaL JDDGAC_09090 0.85 +0.7 1,604,147 - ycaL JDDGAC_09090 0.89 +0.2 1,604,186 + -0.8 1,604,225 - -0.3
Or see this region's nucleotide sequence