Strain Fitness in Escherichia coli ECRC98 around JDDGAC_09075

Experiment: WM_EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntycaI and ihfB are separated by 206 nucleotidesihfB and rpsA are separated by 159 nucleotides JDDGAC_09070: ycaI - ComEC family protein, at 1,597,914 to 1,600,178 ycaI JDDGAC_09075: ihfB - integration host factor subunit beta, at 1,600,385 to 1,600,669 ihfB JDDGAC_09080: rpsA - 30S ribosomal protein S1, at 1,600,829 to 1,602,502 rpsA Position (kb) 1600 1601Strain fitness (log2 ratio) -2 -1 0 1 2at 1599.397 kb on - strand, within ycaIat 1599.628 kb on - strand, within ycaIat 1599.640 kb on + strand, within ycaIat 1599.752 kb on + strand, within ycaIat 1599.753 kb on - strand, within ycaIat 1599.753 kb on - strand, within ycaIat 1599.835 kb on + strand, within ycaIat 1599.863 kb on + strand, within ycaIat 1599.864 kb on - strand, within ycaIat 1599.877 kb on - strand, within ycaIat 1599.880 kb on + strand, within ycaIat 1599.884 kb on + strand, within ycaIat 1599.958 kb on - strandat 1599.993 kb on + strandat 1600.033 kb on + strandat 1600.033 kb on + strandat 1600.149 kb on + strandat 1600.149 kb on + strandat 1600.155 kb on + strandat 1600.155 kb on + strandat 1600.330 kb on - strandat 1600.392 kb on + strandat 1600.393 kb on - strandat 1600.724 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_EV240
remove
1,599,397 - ycaI JDDGAC_09070 0.65 +1.4
1,599,628 - ycaI JDDGAC_09070 0.76 -0.5
1,599,640 + ycaI JDDGAC_09070 0.76 -1.0
1,599,752 + ycaI JDDGAC_09070 0.81 +0.2
1,599,753 - ycaI JDDGAC_09070 0.81 +2.0
1,599,753 - ycaI JDDGAC_09070 0.81 +0.8
1,599,835 + ycaI JDDGAC_09070 0.85 -2.4
1,599,863 + ycaI JDDGAC_09070 0.86 -0.7
1,599,864 - ycaI JDDGAC_09070 0.86 -1.0
1,599,877 - ycaI JDDGAC_09070 0.87 -0.1
1,599,880 + ycaI JDDGAC_09070 0.87 +1.2
1,599,884 + ycaI JDDGAC_09070 0.87 -2.0
1,599,958 - -0.9
1,599,993 + -1.7
1,600,033 + -1.4
1,600,033 + +0.7
1,600,149 + -0.8
1,600,149 + -2.3
1,600,155 + -2.0
1,600,155 + +0.3
1,600,330 - -2.0
1,600,392 + +0.8
1,600,393 - +0.2
1,600,724 - +0.7

Or see this region's nucleotide sequence